Enis010834.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia nisella
Gene Symbol
-
Assembly
GCA_932294385.1
Location
CAKOAM010000046.1:1874094-1894959[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5 1e+02 4.1 0.5 2 21 7 27 6 28 0.86
2 12 0.15 10 7.2 0.3 1 12 196 207 196 216 0.83
3 12 2.8 1.9e+02 3.3 0.3 1 19 347 365 347 365 0.96
4 12 1.8e-05 0.0013 19.6 0.7 1 23 372 394 372 394 0.99
5 12 1.2e-05 0.0008 20.2 1.3 1 23 407 429 407 429 0.99
6 12 5.9e-05 0.004 18.0 1.9 1 23 480 502 480 502 0.98
7 12 0.0084 0.58 11.2 2.3 1 23 518 540 518 540 0.98
8 12 1.5e-06 0.0001 23.0 4.5 1 23 546 568 546 568 0.98
9 12 0.0031 0.21 12.6 6.2 1 23 574 596 574 596 0.97
10 12 2.1e-06 0.00014 22.6 0.4 1 23 602 624 602 624 0.98
11 12 0.00028 0.019 15.9 1.0 1 23 628 650 628 650 0.98
12 12 0.00049 0.034 15.1 0.2 1 23 658 681 658 681 0.96

Sequence Information

Coding Sequence
ATGGGCGACCTATTGTTAAAATGCCCCTTATGTTGTAGCGAGGTATTTAATTCTAGGCAATTATTGGTTGATCACTTGTCAAAAGTTTGGTTTAATTTACGTTGCCCGGCATGCAATGATGAATGTACCTCTATATCGCATATGATTGAACATCTTAATCAGGAGAAATGTGTATCTAAACTTAAGGCTGAGGAAATAGCCTCGAACCCCATAGTTCCAGAAGGAATCCATAATATCTCTGAATCAAGTCAGGCTCTGGACCATCACAATGCGACAGAACACCAAACCGATCAGATGATAAATCAAGCACAAGATGTGTCTGATGTTAGTAGAATGTATGTAGAACTTCTAAGTAAGCAGCTAGCCAAGCCCTGCCTTCAGACCCAGGAATTAAAGTTGGTTAAGGAAGATGGCGAGAGCCGGTATGTCATTGTCACCCAGGCAGACTCCCTCCTGAAGTCTGGCAACACAGTTTTCACTAAACAGAATAGTGATGGGACTATATCTTTGACTACAGTTAAAGACATGAAAATAGAGCCAGACCCTCTCCTTCAAGAGAATGAGCCGGAGGAGACCCAAGAGATATACAGCTGCAACACCTGCGGAGTCTCCTTCTCCTCCGTTATAGACCACATACAGAACTACCACAATGACCAGGATGTTGTAGTAGAGGAGTCACTCGAGAACTGCCAATTGCCTATCGACTATGAACAGTTGAATGGTGAGGAAATAATCACCGGCGACCAGCAACCGTCGCGGCGCGTCATCACCGATACGGGGGACATTGTGGAAGCCCCGGTGTTGCTCAATGCTACTGTCGACGACAACTTGACAATGGCACCAATAAACACGGAGCACTTAGTTGTAAGACAAGCCACGAAGCCGCCGGCCCGGCCCGCCATTACGGAAAAGCGCCTCGTACAAGTTGACAGTGTTGTGAGGAATTTGAAGATCAAAGAGGATGTGAAGAAGGGTCCATACCACAAGGTGGTAGTGAAAGAGATGCAGATGCTGGACGGCGGCAACAAGGTGAAGGTGTACAACTGCATGACCTGCAACATCTACGTCACCACGCTGGACGAGTTCAAGTCGCACCCCTGTAAACCTCAAAAATTCCAATGCCCTCACTGTTCTGTTGCATATGAAAATTCAAAGTCATTGAGTGCACATATGAAAATCCACAAGGTTCACGCTGAAGAAACGGACTCAACGGGACCTTTCAAATGTGATATTTGCTCCACCGTGTTCCCCAGTAATAAATCATTGAAGTTGCACAAACGAATGCACGATCCAGTCAAAGCGCGACCAATAGAGCTCCCAGTCGAATCCGAAGGCACAGAGACAAGTAACGACAAGTTCATCTGCTCGATATGCGACAAACTGATCCCCATCGACTATCGCGCCGTGCACCATAACTCGCACAAGACCAATAACAAATACAACTGTGATATCTGTAACAGAAAGTTCCATTCCAGCGAGTATCTGGAGATGCATATGAGTGTGCATAATTTAGAAAAGGTACAAGTGAATAGGCAGGACAAAACCCTACCATACAACTGCATGTATTGCACCCGGCAGTTCGCGCGGCCGCACGAAAAGGTCAAACACGAGAGGATACACACAGGAGAAAAACCACACTCGTGTGAAATCTGCGGCAAGTCGTTCCGGGTGTCCTACTGTCTGACGCTGCACATGAGGACGCACACAGGGGCGCGGCCCTACGCGTGTCCACACTGCAACAAGAGGTTCAAAGCTCACAGTGTCTACAACCACCACCTGCTCACGCACTCGGAAGTGCGTGCGTACAAGTGCCCGTACTGCCCTAAAGCGTTCAAGACGAGCGTGCAACTGGCGGGGCACAAGAACTCTCACACTAAACCCTTCTCCTGCCAGCACTGTAACAGGCCTTTCGCATCCCTATACGCGGTTCGAGCTCACACGGAAACGCACGCGCGGCAGAACAATCTCAAGTTCTCGTGTACGCTGTGCGGAGCGAGCTACGCGCGAACATTCGCACTGAAGGATCACATCAAGCAGGTGCACAACAAGGAGTTAGATACCGTCGATAAAACGACGGTGGATCTCAAAGAGGAAGGATGGATATTGTCGGAAGGGGACGCCGATGTAATGCAGGTGGCTCTAGACAAATCTGTGCCAAGTGAGTGTGAGAAAGCCTTTAATAATATCGATATCAACAGCACTGGCCAAACTAGGCCAGTGCTGTTTGTGCTGCGGCTGCCGTTTCCTTCTTAA
Protein Sequence
MGDLLLKCPLCCSEVFNSRQLLVDHLSKVWFNLRCPACNDECTSISHMIEHLNQEKCVSKLKAEEIASNPIVPEGIHNISESSQALDHHNATEHQTDQMINQAQDVSDVSRMYVELLSKQLAKPCLQTQELKLVKEDGESRYVIVTQADSLLKSGNTVFTKQNSDGTISLTTVKDMKIEPDPLLQENEPEETQEIYSCNTCGVSFSSVIDHIQNYHNDQDVVVEESLENCQLPIDYEQLNGEEIITGDQQPSRRVITDTGDIVEAPVLLNATVDDNLTMAPINTEHLVVRQATKPPARPAITEKRLVQVDSVVRNLKIKEDVKKGPYHKVVVKEMQMLDGGNKVKVYNCMTCNIYVTTLDEFKSHPCKPQKFQCPHCSVAYENSKSLSAHMKIHKVHAEETDSTGPFKCDICSTVFPSNKSLKLHKRMHDPVKARPIELPVESEGTETSNDKFICSICDKLIPIDYRAVHHNSHKTNNKYNCDICNRKFHSSEYLEMHMSVHNLEKVQVNRQDKTLPYNCMYCTRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRAHTETHARQNNLKFSCTLCGASYARTFALKDHIKQVHNKELDTVDKTTVDLKEEGWILSEGDADVMQVALDKSVPSECEKAFNNIDINSTGQTRPVLFVLRLPFPS