Cstr009939.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387688.1:6573307-6589628[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.65 41 5.5 1.1 2 21 7 27 6 28 0.85 2 13 1.3 78 4.6 0.5 2 21 34 53 33 54 0.93 3 13 0.18 11 7.2 0.3 1 12 199 210 199 219 0.83 4 13 2.2e-05 0.0014 19.6 0.7 1 23 373 395 373 395 0.99 5 13 1.4e-05 0.00087 20.2 1.3 1 23 408 430 408 430 0.99 6 13 8.4 5.2e+02 2.0 0.2 1 8 454 461 454 475 0.89 7 13 7e-05 0.0044 18.0 1.9 1 23 481 503 481 503 0.98 8 13 0.01 0.63 11.2 2.3 1 23 519 541 519 541 0.98 9 13 1.8e-06 0.00011 23.0 4.5 1 23 547 569 547 569 0.98 10 13 0.0037 0.23 12.6 6.2 1 23 575 597 575 597 0.97 11 13 2.5e-06 0.00015 22.6 0.4 1 23 603 625 603 625 0.98 12 13 0.00024 0.015 16.3 1.0 1 23 629 651 629 651 0.98 13 13 0.0011 0.069 14.2 0.1 1 23 659 682 659 682 0.95
Sequence Information
- Coding Sequence
- ATGGGCGACCTATTGTTAAAATGTCCCTTATGTTGTAGCGAGGTATTTAATTCTCGAGAATTGTTAGTTCATCACTTGTCTAAAGTTTGGCTTAATTTGCGCTGTCCAGTTTGCAATGATGAATGTTCCTCAATATCACATATGATAGATCATTTAAATCAAGATAATTGTGTACCAAAGCCTAAGTCTGAGGTGGTGATCCCAAACCCTATAGTTCCGGCGGCAATCCATAATATTGCTGAAGAGACTCCAACTCTAGAACATCACAATGTGGCAGAAAACCAAGCAGATCAGATGTTAAATCAAACCCAAGATGTGTCAGATGTCAGTAGAATGTATGTAGAACTACTGAGCAAGCAGCTAGCCAAGCCCTGCCTTCAGACCCAGGAGCTGAAGCTAGTCAAGGAAGATGGTGAGAGCCGGTATGTCATAGTCACGCAGGAGGAATCCATCTTGAAGTCCGGGAGCACGGTATTCACTAAGCAAAACAGTGACGGGACTATATCATTGACTACAGTTAAAGATATGAAGTTAGAGACGGACCCCGTGGATCCACTTATGCCCGAGAATGAACCAGAGGAGACCCAGGAGATCTACAGCTGTAACACATGTGGGGTCTCCTTTTCATCTGTAATAGATCACATACAGAACTACCACAATGACCAGGAAGTTGTAGTTGAGGAGTCTCTAGATAGCTGCCAGTTACCCATGGACTATGAACAAATGAACGGTGAAGACGTAACAACTGGGGAGCTGCAACAATCGCGGCGCGTCATCACGGACACGGGAGATATTGTGGAAGCGCCTGTGCTGCTGAATGCTACTTTAGAGGACAATCAATTGACAATCGAACCTTTGAACACTCTAGTTGAAAGGAAGCCAAAGCCGCCGCGGCCCGTAGCCACGGTGGAGAAAAAACAAGTGCAAGTTGACAGTGTTGTTACTGACTTGAAGAACAAGGAAGATGTTAAAAAAGGTCCATACCACAAGGTGGTAGTGAAAGAGATGCAAATGCTTGAGGGCGGCAACAAAGTTAAAGTGTACAACTGTATGACTTGTAATATCTATGTCACCACGTTGGACGAGTTTAAGTTACAACCCTGTAAACCTCAAAAATTCCAATGTCCACACTGCTCTGTTGCATATGAAAATTCTAAGTCATTAAGTGCTCATATGAAAATCCACAAAGCTCATGCTGAAGACGCGGACTCAACAGGGCCGTTCAAATGTGATATTTGTTCAACCGTGTTTCCCAGTAACAAATCATTAAAGTTGCACAAACGTATGCATGATCCAGTCAAAGCACGGCCAATAGAGCTACCAGTAGAATCCGAAGGCACAGAAACCAGCAACGACAAATACATCTGCTCGATATGCGACAAATTAATCCCCACCGACTACCGCGCCGTACACCACAACTCGCACAGCACCGATAACAAGTACAACTGCGATATATGCAACCGCAAGTTCCACTCCAGCGAGTACCTCGAAATGCACATGAGCGTGCACAACTTAGATAAGGTCCCAGTGAACAAGCAAGATAAATCCCTTCCGTACAACTGCATGTATTGCACTAGGCAGTTCGCGCGGCCGCACGAAAAGGTCAAGCATGAGAGGATACATACAGGCGAGAAACCACACTCGTGTGAAATCTGCGGCAAATCGTTCCGGGTGTCATATTGTCTAACACTACACATGCGTACACACACCGGCGCGCGGCCCTACGCCTGTCCACATTGCAACAAGAGGTTTAAAGCGCACAGTGTATACAACCACCACCTACTAACACATTCGGAAGTGCGCGCGTACAAATGCCCGTACTGTCCGAAGGCGTTCAAGACCAGCGTGCAACTCGCAGGGCACAAGAACTCGCACACCAAGCCCTTCTCCTGCACACACTGTAACAGGCCTTTCGCATCATTATACGCGGTACGAGCTCACACAGAAACGCATGCGCGGCAGAACAACCTCAAGTTCGCGTGCACGTTGTGTGGGGCGAGCTACGCGCGAACATTCGCGCTCAAGGACCACATCAAACAAGTCCACAACAAGGAGTTGGACGCTGTCAATAAAACGGTGAGTTTACTAGTAAAAACGTGCGCGGCAGAACAACCTCAAGTTCGCGTGCACGTTGTGTGGGGCGAGCTACGCGCGAACATTCGCGCCCAAGGACCACATCAAATAAGATCATTAAAACTGTGTGTTTGCTTTTGTAAACGGATTTACAGACAGGGCTGTGTTGCTTAA
- Protein Sequence
- MGDLLLKCPLCCSEVFNSRELLVHHLSKVWLNLRCPVCNDECSSISHMIDHLNQDNCVPKPKSEVVIPNPIVPAAIHNIAEETPTLEHHNVAENQADQMLNQTQDVSDVSRMYVELLSKQLAKPCLQTQELKLVKEDGESRYVIVTQEESILKSGSTVFTKQNSDGTISLTTVKDMKLETDPVDPLMPENEPEETQEIYSCNTCGVSFSSVIDHIQNYHNDQEVVVEESLDSCQLPMDYEQMNGEDVTTGELQQSRRVITDTGDIVEAPVLLNATLEDNQLTIEPLNTLVERKPKPPRPVATVEKKQVQVDSVVTDLKNKEDVKKGPYHKVVVKEMQMLEGGNKVKVYNCMTCNIYVTTLDEFKLQPCKPQKFQCPHCSVAYENSKSLSAHMKIHKAHAEDADSTGPFKCDICSTVFPSNKSLKLHKRMHDPVKARPIELPVESEGTETSNDKYICSICDKLIPTDYRAVHHNSHSTDNKYNCDICNRKFHSSEYLEMHMSVHNLDKVPVNKQDKSLPYNCMYCTRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCTHCNRPFASLYAVRAHTETHARQNNLKFACTLCGASYARTFALKDHIKQVHNKELDAVNKTVSLLVKTCAAEQPQVRVHVVWGELRANIRAQGPHQIRSLKLCVCFCKRIYRQGCVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00659677;
- 90% Identity
- iTF_00411763;
- 80% Identity
- -