Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990296.1:9103702-9120118[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.3 1.5e+02 4.8 0.6 2 21 7 27 6 28 0.86

2 13 0.54 61 6.0 0.6 2 21 34 53 33 54 0.92

3 13 0.21 24 7.3 0.3 1 12 192 203 192 212 0.83

4 13 3.8 4.3e+02 3.3 0.3 1 19 341 359 341 359 0.96

5 13 0.00011 0.013 17.6 0.8 1 23 366 388 366 388 0.99

6 13 1.6e-05 0.0018 20.2 1.3 1 23 400 422 400 422 0.99

7 13 0.00019 0.021 16.9 2.4 1 23 473 495 473 495 0.98

8 13 0.011 1.3 11.3 2.2 1 23 511 533 511 533 0.98

9 13 2.1e-06 0.00024 23.0 4.5 1 23 539 561 539 561 0.98

10 13 0.0043 0.49 12.6 6.2 1 23 567 589 567 589 0.97

11 13 1.3e-05 0.0015 20.5 0.4 1 23 595 617 595 617 0.98

12 13 0.00039 0.044 15.9 1.0 1 23 621 643 621 643 0.98

13 13 0.00031 0.035 16.2 0.2 1 23 651 674 651 674 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.3	1.5e+02	4.8	0.6	2	21	7	27	6	28	0.86
2	13	0.54	61	6.0	0.6	2	21	34	53	33	54	0.92
3	13	0.21	24	7.3	0.3	1	12	192	203	192	212	0.83
4	13	3.8	4.3e+02	3.3	0.3	1	19	341	359	341	359	0.96
5	13	0.00011	0.013	17.6	0.8	1	23	366	388	366	388	0.99
6	13	1.6e-05	0.0018	20.2	1.3	1	23	400	422	400	422	0.99
7	13	0.00019	0.021	16.9	2.4	1	23	473	495	473	495	0.98
8	13	0.011	1.3	11.3	2.2	1	23	511	533	511	533	0.98
9	13	2.1e-06	0.00024	23.0	4.5	1	23	539	561	539	561	0.98
10	13	0.0043	0.49	12.6	6.2	1	23	567	589	567	589	0.97
11	13	1.3e-05	0.0015	20.5	0.4	1	23	595	617	595	617	0.98
12	13	0.00039	0.044	15.9	1.0	1	23	621	643	621	643	0.98
13	13	0.00031	0.035	16.2	0.2	1	23	651	674	651	674	0.97

Sequence Information

Coding Sequence: ATGGGGGATCTTTTGTTAAAATGTCCCTTATGTTGTAGCGAGGTATTTAATTCGAGACAATCGTTAGTTGACCACTTATCAAAACTTTGGTTTAATTTACACTGCCCGCTGTGCAATGAAGAATGTTCCTCGATAGCACATATGATAGAACATTTGAATCTGGAGAAATGTGCAACTAAACCTAAGACTGAGGACGTTACTTCAAACCCTGTAGTTTCAGACATGCCTGAAGAGAATCCATCTCTAGAACCACACAATGTATCAGAAAACCAGGTAGATCAGATGATAAATCAGTCTCAAGAAGTGTCAGATGTCAGTAGAATGTATGTAGAGCTGCTTAGCAAGCAGCTAGCCAAACCGTGTCTCCAAACACAGGAGCTCAAGCTAGTCAAGGAAGATGGGGAGAGTCGGTATGTGATTGTCACACAGGCAGACTCTATACTGAAGTCTGGCAACACAGTGTTCACTAAACAAAATAGTGATGGGACAATATCTCTGACTACAGTTAAAGATATGAAAATAGAGCCAGAGCCACTCCTGCCGGACACTGAACCCGAGGAGAACCAGGAGATCTACAGTTGCAACACCTGCGGTGTGTCCTTCTCGTCCGTCATAGACCACATCCAGAATTACCATAATGATCAGGATGTTGTGGTTGAGGAGTCACTAGAAAACTGCCAATTACCAGTGGAGTATGAAACTATGAATAGTGAAGAAATAGTAGCTGGGGAACAACAAGCATCGCGGCGCGTCATTACGGATACTGGAGACATTGTGGAGGCTCCTGTGTTGCTGAATGCCATTGTTGACGATAACTTGGCAATAGAACCAGTAAGCACAGAGCTGTTAGTACCGAGAACAAGCTCGAAGGCCCGACCCGCGACGACTGAGAAACGGTTCGTACAAGTCGACAGCGTTGTTAAGAACTTGAAGATCAAGGATGATGCGAAAAAAGGTCCCTACCACAAAGTCGTAGTGAAAGAGATGCAAATGTTGGATGGCGGCAATAAAGTTAAGGTGTATAACTGTATGACGTGCAATATTTATGTTACTACGCTGGACGAATTCAAATCACACCCTTGTAAAACGCAAAAATTCCAATGTCCTCACTGCTCCGTGGCGTATGAAAATACAAAATCATTAAGTGCTCATATGAAAATTCACAAGGTGCACACAGATGAAACGGACACGGGTCCATTCAAATGTGACATCTGCTCCACCGTGTTCCCCAGTAACAAATCGCTGAAGCTGCACAAACGAATGCACGACCCAGTCAAAGCGCGACCAATAGAGCTCCCAGTAGAATCCGAAGGCACCGAGGGCAGCAACGACAAGTTCATCTGTTCCATCTGCGACAAACTCATCCCCATCGACTACCGCGCCGTCCACCACAACTCGCACAAGACCAACAACAAGTACAACTGTGATATCTGCAACCGCAAGTTCCACTCCAGCCAGTATCTGGAGATGCACATGAGCGTGCACAATTTAGATAAGGTACATGTGAATAAGCAAGACAAATCCCTCCCATACAACTGTATGTACTGCTCGCGGCAGTTCGCGCGGCCGCACGAGAAGGTCAAGCATGAAAGGATACATACAGGTGAAAAGCCACATTCGTGTGAAATCTGCGGCAAGTCATTCCGCGTGTCGTATTGTCTTACACTACACATGCGTACGCACACCGGAGCGAGGCCCTACGCATGTCCCCATTGCAACAAGAGGTTCAAAGCTCACAGCGTCTACAACCACCACCTGCTAACGCACTCGGAGGTGCGCGCGTACAAATGCCCGTTCTGCCCCAAAGCGTTCAAAACCAGTGTTCAGTTGGCGGGCCACAAGAACTCGCACACCAAACCCTTCTCCTGCCAACATTGCAATAGGCCCTTCGCGTCTCTGTACGCGGTCCGCGCGCACACGGAGACGCACGCGCGGCAGAACAACCTCAAGTTCTCCTGTACGCTGTGCGGGGCGAGCTACGCGCGGACTTTCGCGCTCAAGGACCATATCAGACAAGTGCACAATAAGGAGTTGGACGCCGTCGATAAAACGCCGGTGGATCTCAAAGAAGAAGGATGGATATTGTCAGAAAGAGACGCCGACACGTTGCAGGTCTCCCTCGATAAAACTGTGCCAAATGAGATAAATCAgctggttataaatacaaacGAAGCAGAATCTGTGATGATATATGAGTCCcataaataa
Protein Sequence: MGDLLLKCPLCCSEVFNSRQSLVDHLSKLWFNLHCPLCNEECSSIAHMIEHLNLEKCATKPKTEDVTSNPVVSDMPEENPSLEPHNVSENQVDQMINQSQEVSDVSRMYVELLSKQLAKPCLQTQELKLVKEDGESRYVIVTQADSILKSGNTVFTKQNSDGTISLTTVKDMKIEPEPLLPDTEPEENQEIYSCNTCGVSFSSVIDHIQNYHNDQDVVVEESLENCQLPVEYETMNSEEIVAGEQQASRRVITDTGDIVEAPVLLNAIVDDNLAIEPVSTELLVPRTSSKARPATTEKRFVQVDSVVKNLKIKDDAKKGPYHKVVVKEMQMLDGGNKVKVYNCMTCNIYVTTLDEFKSHPCKTQKFQCPHCSVAYENTKSLSAHMKIHKVHTDETDTGPFKCDICSTVFPSNKSLKLHKRMHDPVKARPIELPVESEGTEGSNDKFICSICDKLIPIDYRAVHHNSHKTNNKYNCDICNRKFHSSQYLEMHMSVHNLDKVHVNKQDKSLPYNCMYCSRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRAHTETHARQNNLKFSCTLCGASYARTFALKDHIRQVHNKELDAVDKTPVDLKEEGWILSERDADTLQVSLDKTVPNEINQLVINTNEAESVMIYESHK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00659677;
90% Identity: iTF_00148711; iTF_00773147;
80% Identity: -