Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387358.1:8698128-8710783[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1 79 4.8 0.5 2 21 7 27 6 28 0.86

2 13 0.45 33 6.0 0.2 2 21 34 53 33 54 0.93

3 13 0.18 13 7.3 0.3 1 12 197 208 197 217 0.83

4 13 3.1 2.3e+02 3.3 0.1 1 19 346 364 346 364 0.96

5 13 2.3e-05 0.0017 19.5 1.8 1 23 371 393 371 393 0.98

6 13 1.8e-05 0.0013 19.8 1.2 1 23 407 429 407 429 0.99

7 13 9.5e-05 0.0069 17.6 2.0 1 23 480 502 480 502 0.97

8 13 0.0025 0.18 13.1 2.0 1 23 518 540 518 540 0.98

9 13 1.7e-06 0.00013 23.0 4.5 1 23 546 568 546 568 0.98

10 13 0.0036 0.26 12.6 6.2 1 23 574 596 574 596 0.97

11 13 1.1e-05 0.0008 20.5 0.4 1 23 602 624 602 624 0.98

12 13 0.00032 0.023 15.9 1.0 1 23 628 650 628 650 0.98

13 13 0.00057 0.041 15.1 0.2 1 23 658 681 658 681 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1	79	4.8	0.5	2	21	7	27	6	28	0.86
2	13	0.45	33	6.0	0.2	2	21	34	53	33	54	0.93
3	13	0.18	13	7.3	0.3	1	12	197	208	197	217	0.83
4	13	3.1	2.3e+02	3.3	0.1	1	19	346	364	346	364	0.96
5	13	2.3e-05	0.0017	19.5	1.8	1	23	371	393	371	393	0.98
6	13	1.8e-05	0.0013	19.8	1.2	1	23	407	429	407	429	0.99
7	13	9.5e-05	0.0069	17.6	2.0	1	23	480	502	480	502	0.97
8	13	0.0025	0.18	13.1	2.0	1	23	518	540	518	540	0.98
9	13	1.7e-06	0.00013	23.0	4.5	1	23	546	568	546	568	0.98
10	13	0.0036	0.26	12.6	6.2	1	23	574	596	574	596	0.97
11	13	1.1e-05	0.0008	20.5	0.4	1	23	602	624	602	624	0.98
12	13	0.00032	0.023	15.9	1.0	1	23	628	650	628	650	0.98
13	13	0.00057	0.041	15.1	0.2	1	23	658	681	658	681	0.96

Sequence Information

Coding Sequence: ATGGGCGATCTGTTGTTAAAATGTCCATTATGTTGTAGCGAAGTATTTAATTCTAAACAATTGTTAGTAGACCACTTGTCTAAAATATGGTTTAATTTACGTTGCCCTGTATGCAACGATGAATGCTCTTCTATAGCACATTTGATAGAGCATTTAAATTCAGAGGCATGTGTAGCTAAAACTAAAACAGAAGGTCCTAACTCTGGGGTCCTAATGACAACCCAAATTGAACCCGAAGATTGCCAGACCCTAAATCATCAGAATGTTACAGACAACCAAGAGGACCATATCATAGATCAGTCCCAAGTGACTGAAGTAACGGATGTCAGTAGACTGTATGTAGAGTTGCTCAGCAAGCAGCTAGCCAAGCCGTGCCTTCAAACGCAGGAATTAAAGCTAGTCAAAGAAGATGGTGAAAGCCGCTATGTTGTTGTGACCCAAGCTGACGACTCCATCCTAAAGTCAGGGAACACTGTTTTCACAAAACAGAACAGTGATGGGACAATATCTTTGACTACTGTTAAAGACATGAAGATAGAGCCTGAAGCTCTGCTTCCCGAGGTGGATCCAGAGGAAAACCAGGAGATTTACAGCTGCAACACATGCGGGGTATCATTCTCCTCCGTCATAGACCACATCCAGAACTATCACAATGACCAGGATGTTGTGGTTGAGGAATCAATGGAACATTGCACCCTGCCTGCGGAATACGAACCAATCAGCAAAGAAGAGATAATCACCACGGACCAGCAGACTTCACGACGCGTTATCACTGACACCGGCGATATTGTTGAAGCGCCCGTACTGTTGAATGCCACTGTTGGAGATAACTTGACATTACAACCCATGCCGACAGAGCAACTCGTTTACAAACAAGAGTTTACTAAGCCTACTCGGCCGGCAGAAAAACGAGTGGTCCAAGTTGACAGTGTGGTCAGAAACATAAAGGTCAAAAATGATATCAAAAAAGGTCCGTATCACAAGGTGATTGTGAAAGAAATGCAGACGTTGGAAGGCGGCAAAAAAGTTAAAGTATACAACTGTATGATGTGCAATATCTATGTAACGTCGTTGGACGAATTCAAATCGCACCCATGTAAATCACCCAAGTATCATTGCCCGCACTGTCCTGTATCTTACGAAAATTCAAAATCATTAAGTGCTCATATGAAAGTTCATAAAGTCCATACAGAGAGTGAAACAGACAACTCAGGACCATTTAGATGTGACATTTGCTCCACCGTGTTCCCGAGTAACAAGTCGCTAAAGCTACATAAAAGGATGCATGACCCTGTCAAAGCGCGGCCCATAGAACTCCCCGTGGATACGGAAGGCACAGAGCCTAGCAACGACAAGTTCCTCTGCTCCATATGCGACAAACTGATACCCATCGACTACCGAGCGGTGCATCACAACTCGCACAAAACCGACAACAAGTTCAACTGTGATATCTGCAACAGGAAATTCCACTCTAGTGAATATTTGGAGATGCATATGAGCGTACATAATATTGATAAGGTACCACAAAACAAACAAGACAAATCGCTACCATACATGTGTATGTATTGCAATCGGCAGTTCGCTCGGCCGCACGAGAAGGTCAAACATGAGCGGATACACACTGGCGAGAAACCACATTCGTGCGAGATCTGCGGAAAATCATTCCGAGTATCATACTGCCTCACGCTACACATGCGCACGCACACAGGAGCGCGGCCATACGCGTGTCCGCATTGCAACAAGAGGTTCAAAGCACACAGCGTATACAACCACCATTTGCTGACTCACTCCGACGTGCGCGCGTACAAATGCCCGTTCTGTCCGAAAGCGTTCAAGACGAGCGTTCAACTGGCTGGCCACAAGAACTCGCACACCAAACCCTTCTCCTGCCAACACTGTAACAGGCCCTTCGCATCTCTGTACGCGGTGCGAGCACATACAGAGACGCACGCGCGGCAAAACAACCTGAAGTTTTCGTGCACTCTGTGCGGCGCGTCCTACGCACGGACCTTCGCTCTCAAGGACCACATCAAACAAGTACACAAGCAGGACATGGAGTCCATCGACAAGACTACTGTGGACCTCAAAGAGGAAGGTTGGATATTATCCGAAGGCGATGCCGACCGACAAGTCACTCTCGACAAATCGATGCCAAATGAAATAAATCAACTGGTTATAAATACAAACGAAGCAGAATCTGTGATGATAGTCCCTTAA
Protein Sequence: MGDLLLKCPLCCSEVFNSKQLLVDHLSKIWFNLRCPVCNDECSSIAHLIEHLNSEACVAKTKTEGPNSGVLMTTQIEPEDCQTLNHQNVTDNQEDHIIDQSQVTEVTDVSRLYVELLSKQLAKPCLQTQELKLVKEDGESRYVVVTQADDSILKSGNTVFTKQNSDGTISLTTVKDMKIEPEALLPEVDPEENQEIYSCNTCGVSFSSVIDHIQNYHNDQDVVVEESMEHCTLPAEYEPISKEEIITTDQQTSRRVITDTGDIVEAPVLLNATVGDNLTLQPMPTEQLVYKQEFTKPTRPAEKRVVQVDSVVRNIKVKNDIKKGPYHKVIVKEMQTLEGGKKVKVYNCMMCNIYVTSLDEFKSHPCKSPKYHCPHCPVSYENSKSLSAHMKVHKVHTESETDNSGPFRCDICSTVFPSNKSLKLHKRMHDPVKARPIELPVDTEGTEPSNDKFLCSICDKLIPIDYRAVHHNSHKTDNKFNCDICNRKFHSSEYLEMHMSVHNIDKVPQNKQDKSLPYMCMYCNRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSDVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRAHTETHARQNNLKFSCTLCGASYARTFALKDHIKQVHKQDMESIDKTTVDLKEEGWILSEGDADRQVTLDKSMPNEINQLVINTNEAESVMIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00659677;
90% Identity: iTF_01136053;
80% Identity: -