Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000032.1:7296557-7312411[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1 91 4.8 0.3 2 21 7 27 6 28 0.86

2 13 1 83 4.9 0.3 2 21 34 53 33 54 0.92

3 13 0.18 14 7.3 0.3 1 12 197 208 197 217 0.83

4 13 4.6 3.7e+02 2.8 0.3 1 19 347 365 347 365 0.96

5 13 5.8e-06 0.00047 21.4 0.3 1 23 372 394 372 394 0.99

6 13 1.9e-05 0.0015 19.8 1.2 1 23 408 430 408 430 0.99

7 13 9.7e-05 0.0078 17.6 2.0 1 23 481 503 481 503 0.97

8 13 0.0026 0.21 13.1 2.0 1 23 519 541 519 541 0.98

9 13 1.8e-06 0.00014 23.0 4.5 1 23 547 569 547 569 0.98

10 13 0.0037 0.29 12.6 6.2 1 23 575 597 575 597 0.97

11 13 1.1e-05 0.0009 20.5 0.4 1 23 603 625 603 625 0.98

12 13 0.00033 0.026 15.9 1.0 1 23 629 651 629 651 0.98

13 13 0.00058 0.047 15.1 0.2 1 23 659 682 659 682 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1	91	4.8	0.3	2	21	7	27	6	28	0.86
2	13	1	83	4.9	0.3	2	21	34	53	33	54	0.92
3	13	0.18	14	7.3	0.3	1	12	197	208	197	217	0.83
4	13	4.6	3.7e+02	2.8	0.3	1	19	347	365	347	365	0.96
5	13	5.8e-06	0.00047	21.4	0.3	1	23	372	394	372	394	0.99
6	13	1.9e-05	0.0015	19.8	1.2	1	23	408	430	408	430	0.99
7	13	9.7e-05	0.0078	17.6	2.0	1	23	481	503	481	503	0.97
8	13	0.0026	0.21	13.1	2.0	1	23	519	541	519	541	0.98
9	13	1.8e-06	0.00014	23.0	4.5	1	23	547	569	547	569	0.98
10	13	0.0037	0.29	12.6	6.2	1	23	575	597	575	597	0.97
11	13	1.1e-05	0.0009	20.5	0.4	1	23	603	625	603	625	0.98
12	13	0.00033	0.026	15.9	1.0	1	23	629	651	629	651	0.98
13	13	0.00058	0.047	15.1	0.2	1	23	659	682	659	682	0.96

Sequence Information

Coding Sequence: ATGGGCGATCTGTTGTTAAAATGTCCTTTATGCTGTAGCGAAGTATTTGATTCTAAAGAATTGTTAGTTGACCACTTGTCTAAAATATGGTTTAATTTACGTTGCCCTGTATGCAACGATGAATGTTCTTCTTTAGCACATATGATAGAGCACCTTAATTCAGAGGCATGTGTTCCTAAAAGTAAATCAGAAGGCCCCGACTCCGGGGTCCTAACGACAACTCAAATTGAACCTGAAGAATGCCAGACCCTGAATCATCAGAATGTTACAGACAACCAAGAAGACCATAATATCATAGATCAGTCTCAAGTAACAGAAGTATCAGACGTCAGTAGACTGTATGTAGAGTTGCTGAGCAAGCAGCTAGCCAAGCCGTGCCTTCAAACGCAGGAACTAAAGCTGGTCAAAGAAGATGGTGAAAGTCGCTATGTTGTTGTATCCCAAGCTGACGACATCCTAAAGTCTGGAAACACTGTTTTCACAAAACAGAACAGTGATGGGACAATATCTTTGACTACTGTTAAAGACATGAAGATAGAGCCAGACCCTCTGCTTACTGAGGTGGACCCAGAAGAAAACCAGGAGATTTACAGCTGCAACACATGTGGAGTATCCTTCTCCTCTGTCATAGACCACATCCAGAACTATCACAACGACCAGGATGTTGTGGTTGAGGAATCGATGGAACATTGCACCCTGCCTGCGGAATATGAGccaataaacaaagaagagCTAATCACTGGGGACCAGCAGCCTTCACGACGCGTTATCACCGACACTGGCGATATTGTCGAGGCTCCTGTCCTGCTGAATGCCAATGTTGGAGATAACTTGGCAATACAACCCATGCAGACGGAGCAACTTGTTTTCAAACAAGAGGTCACTAAGCCTAGTAGGTTGGCAGAAAAGCGAGTTGTACAAGTTGACAGTGTGGTGAGAAACATAAAGATTAATAAAAATGATATCAAAAAAGGTCCATACCACAAGGTGATCGTCAAAGAAATGCAGACATTGGAAGGTGGCAAAAAAGTTAAAGTTTACAACTGTATGACGTGCAATATCTATGTAACGTCGTTGGACGAATTCAAATCACATCCTTGTAAACCACctaAGTATCAATGCCCGCACTGCCCTGTAGCTTACGAAAACTCAAAATCATTAAGCGCTCATATGAAGGTCCATAAAAGCCACACAGAGAGCGAACCTGACAATTCGGGCCCATTTAGATGTGATATCTGCTCCACTGTGTTCCCGAGTAACAAGTCTCTGAAGCTACATAAAAGGATGCATGACCCTGTCAAagcACGGCCCATAGAACTCCCTGTGGAGACAGAAGGCTCAGAGCCCAGCAACGACAAGTTCCTCTGCTCCGTATGCGACAAACTGATACCCATCGACTACCGAGCGGTGCATCACAACTCGCACAAAACGGACAACAAGTTCAACTGTGATATTTGCAACAGGAAATTCCACTCTAGTGAATATTTGGAGATGCATATGAGTGTACATAATATTGATAAGGTACCTCAAAACAAACAAGACAAATCGCTGCCGTACATGTGTATGTATTGCAATCGGCAGTTTGCTCGACCGCACGAAAAGGTCAAGCACGAGCGGATACACACCGGCGAAAAACCGCATTCGTGTGAGATCTGCGGAAAATCGTTCAGAGTGTCATACTGCCTCACGCTACATATGCGCACGCACACAGGAGCACGGCCCTACGCCTGTCCGCACTGCAACAAGAGGTTCAAAGCGCACAGCGTGTACAACCACCATCTACTGACGCACTCGGACGTCCGCGCGTACAAGTGTCCGTTCTGTCCGAAGGCGTTCAAGACGAGCGTTCAACTGGCCGGCCACAAAAATTCGCACACCAAACCATTCTCCTGCCAACACTGTAACAGGCCTTTCGCGTCCCTGTACGCGGTGCGAGCGCACACAGAGACGCACGCGCGACAGAACAACCTCAAGTTTTCCTGCACTCTGTGCGGCGCGTCCTACGCACGCACCTTCGCTCTCAAGGACCACATCAAACAAGTACACAAAGAGGACATCGATGCCGTCGATAAGACTACTGTGGACCTCAAAGAGGAAGGGTGGATTTTATCCGAAGGTGATGCCGACCGACAAGTCACTCTCCAGAAATCGATGCCAAACGAAaTAAATCAACTGGTTATAAACACAAACGAAGCAGAATCTGTGATGATAGTCCCTTAA
Protein Sequence: MGDLLLKCPLCCSEVFDSKELLVDHLSKIWFNLRCPVCNDECSSLAHMIEHLNSEACVPKSKSEGPDSGVLTTTQIEPEECQTLNHQNVTDNQEDHNIIDQSQVTEVSDVSRLYVELLSKQLAKPCLQTQELKLVKEDGESRYVVVSQADDILKSGNTVFTKQNSDGTISLTTVKDMKIEPDPLLTEVDPEENQEIYSCNTCGVSFSSVIDHIQNYHNDQDVVVEESMEHCTLPAEYEPINKEELITGDQQPSRRVITDTGDIVEAPVLLNANVGDNLAIQPMQTEQLVFKQEVTKPSRLAEKRVVQVDSVVRNIKINKNDIKKGPYHKVIVKEMQTLEGGKKVKVYNCMTCNIYVTSLDEFKSHPCKPPKYQCPHCPVAYENSKSLSAHMKVHKSHTESEPDNSGPFRCDICSTVFPSNKSLKLHKRMHDPVKARPIELPVETEGSEPSNDKFLCSVCDKLIPIDYRAVHHNSHKTDNKFNCDICNRKFHSSEYLEMHMSVHNIDKVPQNKQDKSLPYMCMYCNRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSDVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRAHTETHARQNNLKFSCTLCGASYARTFALKDHIKQVHKEDIDAVDKTTVDLKEEGWILSEGDADRQVTLQKSMPNEINQLVINTNEAESVMIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00659677;
90% Identity: -
80% Identity: -