Ebil034722.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000534.1:527924-529489[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.7e-06 0.00079 20.8 1.0 2 23 74 96 73 96 0.94 2 14 0.00062 0.05 15.2 2.8 2 23 104 126 103 126 0.95 3 14 0.0016 0.13 13.9 1.6 2 23 133 155 132 155 0.92 4 14 2.7e-07 2.2e-05 25.8 0.8 3 23 164 185 162 185 0.95 5 14 4.2e-05 0.0034 18.9 1.2 2 23 193 215 192 215 0.96 6 14 0.00013 0.01 17.3 0.8 1 23 222 245 222 245 0.97 7 14 0.039 3.1 9.5 3.3 3 23 253 274 252 274 0.95 8 14 0.00013 0.011 17.3 1.9 2 23 290 311 289 312 0.93 9 14 7.7e-05 0.0062 18.0 0.1 3 23 321 342 320 342 0.96 10 14 6.7e-07 5.4e-05 24.5 3.3 3 23 349 370 347 370 0.96 11 14 0.0064 0.52 12.0 6.4 3 23 379 400 377 400 0.96 12 14 0.00024 0.019 16.5 5.7 1 23 406 428 406 428 0.98 13 14 0.99 81 5.1 1.5 1 23 434 457 434 457 0.92 14 14 0.065 5.3 8.8 0.6 2 21 484 503 483 504 0.92
Sequence Information
- Coding Sequence
- ATGGACCAAATGGACCACGAAATAGAGCAGATCTACATAAAACCCGACATAGCTCACCTGAAGGTGGAGGTGAACTGCGAGCAGGAGCGCGGAGACCCCTACCAATCCCCGGAGCATGTCTTCAGCGTCAAGGCAGAAGACGACTATGAAAATCCAAGAGCTAAAGACTCTATTGAGATAGTCGGTAAAGTGTATGAAAACGGAAAAATAAATAGACTACAATGCCCACAGTGTGATAATACGTTCAAGAACAGGGCCAATTTGAAGCAGCATCTCAAATTCGTGCATTCATCCGAAGATGACACAGTAGAGTGCGAGAAATGTTACAGGACTTTCAAATCCGTAGGTCACTTAAGGTCGCACATCCACTCCGTTCACGCTGAAGAGAAAGAAATCACTTGTGAGCATTGTGGCAAAGTTTTCTTGAACAAGAAACGTCTTAACAACCACATATTCTACGCTCACCCTGAACCAGAGGAAAGCGTCAATTGCAACATATGTACTAAAGCTTTCAAGCGGAGATATAACTTGAAAATACATATGAGACTTGTCCATCCTTCGGAAGATAGTTCCGTGCAATGCCCGCACTGCGACAAGAAGTTCAAAGTGGACATGTTACTGCAGAGACATATAAAGTGGAGTCACCCGCAAGACGGGATGATGTACAGATGCCCGGAATGCGGGCGGACGCTCCCGTCCATCGCTTGCTTCAGGAAACACATGCAAAACGTACATTCCGGATCCCAAGACGCCATTTGTAAAGTTTGCTGCAAAGTTTTCAAGACCGTTAAGACTTTGAGGAGGCACGAGAAGAATATACACGGGGGGGAGAAGGTTGAGGCCAAACCGTGCAAAGTAGGTGACATACCGTGTTCGCAGTGCGACAAGAAATTCACTACAAACACGGCGTTATTCTGGCATTTTGAGCGACACCACTCTGAGAACAAACGGAGCAATGCTTGTCAAGTGTGCGGAAAAGAGCTATCGGACCAGGGCAGTCTGAAGCGACATCTAGAAATGGTGCATTCATATGAGCCGTCGAACTGTCACATATGCTCGAAGACTTTTAAAAGTCAGATGAACCTGCAGAGGCATATTAGGGTGACGCACGCCCCGCCCGAAGCCGCTCAAAACTGCGACATTTGTCATAAAACCTTTAAATGCTCGATGCATTTACGCATACACATAAACACAGTGCATTCAACGGAGGGTACCTTCCACTGTGATATCTGTAATAAAGAGTTTTCTTCCAAGAAATACATGTTGAAACATAAGAAAACTCATGTAGATGTTAAACTGTTCCCCTGTGGCGTTTGTAATAAGTTATTCAAGTGTGTTAACGATGTTAAAAAGCACGCAAAGCGAGTGCATTTGAAGGCAGTTTTGAAAACAGAAATTGAAGAGTCTACGGAAAGAAGTATAGAAGATCTTAATGGCATAGATGGACTGAATTGTCTGAAATGTGGTTGTGATTTCGAAAATGAGGCTGAGTTGCACTCTCATATTTTGAATTGTAGTGAGCTTCCGCCGACGGCATTTGTGAAGGTAGAATTTCGGGACATGTAG
- Protein Sequence
- MDQMDHEIEQIYIKPDIAHLKVEVNCEQERGDPYQSPEHVFSVKAEDDYENPRAKDSIEIVGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDTVECEKCYRTFKSVGHLRSHIHSVHAEEKEITCEHCGKVFLNKKRLNNHIFYAHPEPEESVNCNICTKAFKRRYNLKIHMRLVHPSEDSSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAICKVCCKVFKTVKTLRRHEKNIHGGEKVEAKPCKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNACQVCGKELSDQGSLKRHLEMVHSYEPSNCHICSKTFKSQMNLQRHIRVTHAPPEAAQNCDICHKTFKCSMHLRIHINTVHSTEGTFHCDICNKEFSSKKYMLKHKKTHVDVKLFPCGVCNKLFKCVNDVKKHAKRVHLKAVLKTEIEESTERSIEDLNGIDGLNCLKCGCDFENEAELHSHILNCSELPPTAFVKVEFRDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00659639; iTF_00660532; iTF_00658683; iTF_00659964; iTF_00657504;
- 80% Identity
- -