Enis020348.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000119.1:146265-147863[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.4e-05 0.0017 19.2 1.0 2 23 85 107 84 107 0.94 2 14 0.00047 0.032 15.1 2.8 2 23 115 137 114 137 0.95 3 14 0.0013 0.091 13.7 1.5 2 23 144 166 143 166 0.93 4 14 3.1e-07 2.1e-05 25.2 0.8 3 23 175 196 173 196 0.95 5 14 2.7e-05 0.0019 19.0 1.1 2 23 204 226 203 226 0.96 6 14 9.7e-05 0.0066 17.3 0.8 1 23 233 256 233 256 0.97 7 14 0.00015 0.0099 16.8 1.3 3 23 264 285 263 285 0.95 8 14 0.0001 0.007 17.2 1.9 2 23 301 322 300 323 0.93 9 14 5.9e-05 0.004 18.0 0.1 3 23 332 353 331 353 0.96 10 14 5.1e-07 3.5e-05 24.5 3.3 3 23 360 381 358 381 0.96 11 14 0.0038 0.26 12.3 4.3 3 23 390 411 388 411 0.96 12 14 0.00032 0.022 15.7 5.7 1 23 417 439 417 439 0.98 13 14 0.76 52 5.1 1.5 1 23 445 468 445 468 0.92 14 14 0.05 3.4 8.8 0.6 2 21 495 514 494 515 0.92
Sequence Information
- Coding Sequence
- ATGGAGCAAATGGACCAAGAAATAGAGCAGATCTACATAAAACCGGACATAGCTCACCTGAAGGTGGAGGTGAACTGTGAGCAGGAGCGCGGAGACCCCTACCAGCCGCCGGAGCACGCCTTCAGCGCCAAGGACGAAGACAACCTACCCTCAAATACGTATGAACACTCCAACGACTATGACAATCCAAGAGCTAAAGACTCCATTGAGATAGTCGGTAAAGTGTATGAGAACGGAAAAATAAATAGACTTCAATGCCCACAGTGTGATAACAATTTCAAAAACCGCGCAAATTTGAAGCAGCATCTCAAATTCGTGCATTCGTCCGAAGATGACATAGTAGAGTGTGAGAAATGTTACAGGACTTTCAAATCCGTAGGTCACTTAAGGTCGCACATCCACTCCGTTCATGCTGAAGAGAAAGAAGTCACTTGCGAGCATTGCGGCAAAGTGTTCTTGAACAAGAAACGTCTCAACAATCACATATTCTACGCTCACCCGGAACCAGAGGAAAGCGTCAATTGTAGCATATGTTCTAAAGCTTTCAAGCGGAGATATAACTTGAAAATACATATGAGACTCGTCCATCCTTCGGAAGACAGTTCCGTGCAATGCCCACACTGTGATAAGAGGTTTAAAGTGGACATGTTACTGCAGAGACATATAAAGTGGAGTCACCCGCAAGACGGGATGATGTACAGATGCCCGGAATGCGGCCGGACGCTGCCGTCCATCGCTTGCTTCAGAAAACACATGCAAAACGTACATTCCGGATCTCAGGATGCTATTTGTAAAATCTGCTATAAAGTTTTCAAAACCGTTAAAACTTTGAAGAGACACGAAAAGAATATACATGGTGGAGAGAAAGTTGAGGCCAAACCGTGCAAAGTAGGAGACATACCGTGTTCGCAGTGCGACAAGAAATTTACGACAAACACAGCATTATTCTGGCATTTTGAGCGACACCACTCTGAGAATAAAAGGAGCAATGCTTGTCAAGTGTGCGGTAAAGAGCTATCGGACCAGGGAAGTCTGAAAAGGCATCTAGAAATGGTGCATTCATTTGAGCCTTCAAACTGTCACATATGCTCAAAGACTTTTAAAAGCCAGATGAACCTGCAGAGGCATATTAGAGTGACGCACGCCCCGCCCGAAGCCGCACAAAACTGCGATGTTTGCCAAAAAACTTTCAAATGCTCAATGCATTTACGCATACATATAAACACGGTGCATTCAACTGAAGGCACCTTCCACTGTGATGTATGTAATAAAGAGTTTTCTTCCAAGAAATACATGTTGAAACATAAGAAAACTCATGTAGATGTTAAACTGTTCCCCTGTGGTGTATGTAATAAGTTATTCAAATGTGTGAACGACGTTAAGAAACACGCAAAGCGAGTGCATTTGAAAGCAGTAGTCAAAACTGAAAACGAAGAATGTACGGACAAAAATACAGAAGATGTTAACGGCACAGAGGCACTGAACTGTCTGAAATGTGGTTGTGATTTCGAAAACGAGGCAGAGTTACACTCTCATATTTTGAATTGTAGTGAACTCCCGGCGATGGCTTTTGTGAAGGTAGAATTTCAGGACATGTAG
- Protein Sequence
- MEQMDQEIEQIYIKPDIAHLKVEVNCEQERGDPYQPPEHAFSAKDEDNLPSNTYEHSNDYDNPRAKDSIEIVGKVYENGKINRLQCPQCDNNFKNRANLKQHLKFVHSSEDDIVECEKCYRTFKSVGHLRSHIHSVHAEEKEVTCEHCGKVFLNKKRLNNHIFYAHPEPEESVNCSICSKAFKRRYNLKIHMRLVHPSEDSSVQCPHCDKRFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAICKICYKVFKTVKTLKRHEKNIHGGEKVEAKPCKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNACQVCGKELSDQGSLKRHLEMVHSFEPSNCHICSKTFKSQMNLQRHIRVTHAPPEAAQNCDVCQKTFKCSMHLRIHINTVHSTEGTFHCDVCNKEFSSKKYMLKHKKTHVDVKLFPCGVCNKLFKCVNDVKKHAKRVHLKAVVKTENEECTDKNTEDVNGTEALNCLKCGCDFENEAELHSHILNCSELPAMAFVKVEFQDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00656369;
- 80% Identity
- iTF_00659964;