Ebru064694.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977961.1:17743857-17745464[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2e-05 0.0015 20.8 1.0 2 23 89 111 88 111 0.94 2 14 0.00076 0.097 15.1 2.8 2 23 119 141 118 141 0.95 3 14 0.002 0.25 13.8 1.6 2 23 148 170 147 170 0.92 4 14 5e-07 6.3e-05 25.2 0.8 3 23 179 200 177 200 0.95 5 14 5.1e-05 0.0065 18.8 1.2 2 23 208 230 207 230 0.96 6 14 0.00016 0.02 17.3 0.8 1 23 237 260 237 260 0.97 7 14 0.047 5.9 9.5 3.4 3 23 268 289 267 289 0.95 8 14 0.00016 0.021 17.2 1.9 2 23 305 326 304 327 0.93 9 14 6.5e-05 0.0083 18.5 0.1 3 23 336 357 335 357 0.96 10 14 8.3e-07 0.00011 24.5 3.3 3 23 364 385 362 385 0.96 11 14 0.025 3.1 10.4 6.4 3 23 394 415 392 415 0.96 12 14 0.00052 0.066 15.7 5.7 1 23 421 443 421 443 0.98 13 14 1.2 1.6e+02 5.0 1.5 1 23 449 472 449 472 0.92 14 14 0.08 10 8.8 0.6 2 21 498 517 497 518 0.92
Sequence Information
- Coding Sequence
- ATGGACCAAATAGACCAAGAAATACAAATCGAAATAGAGCAGATCTACATAAAACCGGACATAGGTCACCTTAAGGTCGAGGTGAACTGCGAGCAGGAGCGGGGGGACCCCTACCAGCCCCCGGAGCACGTCTTCAGCGTCAATGATGAGGACAACCTACCCCCACATACGTATCAACACTCCAACGACCATGACAATCCAAGAGCTAAAGACTCTATTGAGATAGTCGGTAAAGTGTACGAGAACGGAAAAATTAATAGACTTCAATGCCCACAGTGCGATAATACTTTCAAAAACCGCGCCAATCTGAAGCAGCATCTCAAATTCGTGCATTCCTCCGAAGATGACATAGTAGAGTGCGAGAAATGTTACAGGACTTTCAAATCCGTAGGGCACTTGAGGTCGCATATCCACTCCGTTCACGCTGAAGAGAAAGAAATCACTTGTGAGCATTGTGGCAAAGTTTTCTTGAACAAAAAACGCCTCAACAACCACATATTCTACGCTCACCCGGAGCCAGAGGAAAGCGTCAATTGTAGCATATGTTCTAAAGCTTTTAAGCGGAGATACAACTTGAAAATACATATGAGACTCGTCCATCCTTCGGAAGACAGTTCCGTGCAGTGCCCACACTGTGACAAGAAGTTCAAAGTGGACATGTTACTACAGAGACATATAAAGTGGAGTCACCCGCAAGACGGGATGATGTACAGATGCCCGGAGTGTGGCCGGACGCTGCCGTCCATTGCTTGTTTCAGAAAACACATGCAAAATGTACATTCCGGATCTGAAGATGCCATTTGTAAAGTCTGCTGCAAAGTTTTCAAAACGGTAAAGACTTTGAAGAGACACGAAAAGAATATACATGGGGGGGAGAAAGTTGAAACCAAACCATGCAAAGTAGGAGATATACCGTGTTCGCAGTGTGACAAGAAGTTTACTACAAACACAGCCTTATTCTGGCATTTTGAGCGACACCACTCTGAGAATAAAAGGAGCAATGCTTGTCAAGTGTGCGGGAAAGAGCTATCGGACCAGGGAAGTCTGAAGCGACATCAAGAAATGGTGCATTCATTTGAGCCTTCAAACTGTCACATATGCTCAAAGACCTTTAAAAGCCAGATGAACCTTCAGAGGCACATTAGAGTGACGCACGCCCCGCCCGAAGCAGCTCAAAACTGCGATATATGTCATAAAACCTTTAAATGCTCAATGCATTTACGCATACACGTAAACACAGTGCATTCAACTGAAGGCACCTTCCACTGTGATGTCTGTAATAAAGAGTTTTCTTCCAAGAAATACATGTTGAAACATAAGAAAACTCATGTAGATGTTAAACTGTTCCCATGTGGTGTATGTAATAAGTTATTCAAATGTGTGAACGATGTTAAAAAACACGCAAAGCGAGTGCATTTGAAGGCAGTAGTGAAAACGGAAAACGAAGAATGTACAGAAAAAAGTACAGATATTAATGGCACAGAAGCACTGAATTGTTTGAAATGTGGTTGTGATTTTGAGAATGAGGCTGAGTTACACTCTCATATTTTGAATTGTAGTGAGCTACCAGCGACAGCATTTGTGAAGGTAGAATTCCATGACATGTAG
- Protein Sequence
- MDQIDQEIQIEIEQIYIKPDIGHLKVEVNCEQERGDPYQPPEHVFSVNDEDNLPPHTYQHSNDHDNPRAKDSIEIVGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECEKCYRTFKSVGHLRSHIHSVHAEEKEITCEHCGKVFLNKKRLNNHIFYAHPEPEESVNCSICSKAFKRRYNLKIHMRLVHPSEDSSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSEDAICKVCCKVFKTVKTLKRHEKNIHGGEKVETKPCKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNACQVCGKELSDQGSLKRHQEMVHSFEPSNCHICSKTFKSQMNLQRHIRVTHAPPEAAQNCDICHKTFKCSMHLRIHVNTVHSTEGTFHCDVCNKEFSSKKYMLKHKKTHVDVKLFPCGVCNKLFKCVNDVKKHAKRVHLKAVVKTENEECTEKSTDINGTEALNCLKCGCDFENEAELHSHILNCSELPATAFVKVEFHDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00656369;
- 80% Identity
- -