Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388225.1:564733-566331[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3e-05 0.0011 20.3 1.0 2 23 85 107 84 107 0.94

2 14 0.00056 0.045 15.1 2.8 2 23 115 137 114 137 0.95

3 14 0.0014 0.12 13.8 1.6 2 23 144 166 143 166 0.92

4 14 2.5e-07 2e-05 25.7 0.8 3 23 175 196 173 196 0.95

5 14 3.7e-05 0.003 18.8 1.2 2 23 204 226 203 226 0.96

6 14 0.00025 0.02 16.3 1.2 1 23 233 256 233 256 0.97

7 14 0.034 2.8 9.5 3.4 3 23 264 285 263 285 0.95

8 14 0.00012 0.0098 17.2 1.9 2 23 301 322 300 323 0.93

9 14 6.9e-05 0.0056 18.0 0.1 3 23 332 353 331 353 0.96

10 14 6e-07 4.9e-05 24.5 3.3 3 23 360 381 358 381 0.96

11 14 0.0057 0.46 12.0 6.4 3 23 390 411 388 411 0.96

12 14 0.00032 0.026 15.9 5.6 1 23 417 439 417 439 0.98

13 14 0.89 72 5.1 1.5 1 23 445 468 445 468 0.92

14 14 0.054 4.4 8.9 1.0 2 21 495 514 494 515 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3e-05	0.0011	20.3	1.0	2	23	85	107	84	107	0.94
2	14	0.00056	0.045	15.1	2.8	2	23	115	137	114	137	0.95
3	14	0.0014	0.12	13.8	1.6	2	23	144	166	143	166	0.92
4	14	2.5e-07	2e-05	25.7	0.8	3	23	175	196	173	196	0.95
5	14	3.7e-05	0.003	18.8	1.2	2	23	204	226	203	226	0.96
6	14	0.00025	0.02	16.3	1.2	1	23	233	256	233	256	0.97
7	14	0.034	2.8	9.5	3.4	3	23	264	285	263	285	0.95
8	14	0.00012	0.0098	17.2	1.9	2	23	301	322	300	323	0.93
9	14	6.9e-05	0.0056	18.0	0.1	3	23	332	353	331	353	0.96
10	14	6e-07	4.9e-05	24.5	3.3	3	23	360	381	358	381	0.96
11	14	0.0057	0.46	12.0	6.4	3	23	390	411	388	411	0.96
12	14	0.00032	0.026	15.9	5.6	1	23	417	439	417	439	0.98
13	14	0.89	72	5.1	1.5	1	23	445	468	445	468	0.92
14	14	0.054	4.4	8.9	1.0	2	21	495	514	494	515	0.92

Sequence Information

Coding Sequence: ATGGACCAAATGGAGCAAGAAATAGAGCAGATCTACATAAAACCGGACATAGCTCACCTGAAGGTGGAGGTGAACTGCGAGCAGGAGCGCGGAGACCCCTACCAGTCCCCGGAGCATGTCTTCAGCGCCAAGGCAGAAGACGTCCTAGCACCACACACGTATGAGGACTCCAACGACTACGAGAATCCAACAGCTAAAGACTCTGTCGAGATAGTCGGTAAAGTGTATGAGAACGGAAAAATAAATAGACTTCAATGCCCACAGTGTGATAGTACGTTCAAGAACAGGGCCAATTTGAAGCAGCATCTCAAATTCGTGCATTCATCCGAAGATGACACGGTAGAGTGCGAGAAATGTTACAGGACTTTCAAATCCGTAGGTCACTTAAGGTCGCACATCCACTCCGTGCACGCTGAAGAGAAAGAAATCACTTGTGAGCATTGCGGCAAAGTTTTCTTGAACAAGAAACGTCTTAACAACCACATATTCTACGCTCACCCTGAACCAGAGGAAAGCGTCAATTGCAACATATGTTCTAAAGCTTTCAAGCGGAGATATAACTTGAAAATACATATGAGACTCGTCCATCCTTCGGAAGACAGTTCCGTGCAGTGTCCACACTGTGACAAGAAGTTCAAAGTGGACATGTTACTGCAGAGACATATAAAGTGGAGTCACCCGCAAGACGGGATGATGTACAGATGCCCGCAATGCGGGCGGACGCTGCCGTCCATTGCTTGCTTCAGAAAACACATGCAAAACGTACATTCCGGATCCCAAGACGCCATTTGTAAAGTCTGCTGCAAAGTTTTCAAGACCGTTAAGACTTTGAAGAGGCATGAGAAGAATATACATGGGGGGGAGAAAGTTGAGGCCAAACCGGTCAAAGTTGGTGACATACCGTGTTCACAGTGCGACAAGAAATTCACTACAAACACGGCGTTATTTTGGCATTTTGAGCGACACCACTCTGAGAACAAACGGAGCAACGCTTGTCAAGTGTGCGGGAAAGAGCTATCGGACCAGGGCAGTCTGAAGCGACATCTAGAAATGGTGCATTCATATGAGCCGTCGAACTGTCACATATGCTCAAAGACTTTTAAAAGCCAGATGAACCTGCAGAGGCATATAAGGGTGACGCACGCCCCGCCCGAAGCCGCTCAAAACTGCGACATTTGTCATAAAACCTTTAAATGCTCGATGCATTTACGCATACACATAAACACAGTGCACTCAACGGAGGGCACCTTCCACTGTGACATCTGTAATAAAGAGTTTTCTTCCAGGAAATACATGTTGAAACATAAGAAAACTCATGTAGATGTTAAACTGTTTCCCTGCGGCGTTTGTAATAAGTTATTCAAGTGTGTTAACGATGTTAAAAAACACGCGAAGCGAGTGCATTTGAAGGCAGTTGTGAAAACGGAAATCGAAGAGTCTATGGAAAGAAGTACAGATGATATTAATGACATAGATGGACTGAATTGTCTGAAATGTGGTTGTAATTTCGAAGATGAGACAGAGTTGCACTCTCATATTTTGAATTGTAGTGAGCTTCCGCCGACGGCATTTGTGAAGGTAGAATTTCGGGACATGTAG
Protein Sequence: MDQMEQEIEQIYIKPDIAHLKVEVNCEQERGDPYQSPEHVFSAKAEDVLAPHTYEDSNDYENPTAKDSVEIVGKVYENGKINRLQCPQCDSTFKNRANLKQHLKFVHSSEDDTVECEKCYRTFKSVGHLRSHIHSVHAEEKEITCEHCGKVFLNKKRLNNHIFYAHPEPEESVNCNICSKAFKRRYNLKIHMRLVHPSEDSSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPQCGRTLPSIACFRKHMQNVHSGSQDAICKVCCKVFKTVKTLKRHEKNIHGGEKVEAKPVKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNACQVCGKELSDQGSLKRHLEMVHSYEPSNCHICSKTFKSQMNLQRHIRVTHAPPEAAQNCDICHKTFKCSMHLRIHINTVHSTEGTFHCDICNKEFSSRKYMLKHKKTHVDVKLFPCGVCNKLFKCVNDVKKHAKRVHLKAVVKTEIEESMERSTDDINDIDGLNCLKCGCNFEDETELHSHILNCSELPPTAFVKVEFRDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00148678;
90% Identity: iTF_00656369;
80% Identity: -