Enis020348.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000119.1:146265-147863[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.004 50 4.6 0.1 26 48 85 107 82 113 0.90 2 9 0.067 8.4e+02 0.7 0.1 25 48 114 137 106 143 0.82 3 9 0.17 2.2e+03 -0.7 0.0 21 45 139 163 134 169 0.82 4 9 0.0025 32 5.2 0.3 22 48 170 196 165 201 0.89 5 9 0.24 3e+03 -1.1 0.0 25 48 203 226 197 228 0.81 6 9 5.1e-06 0.064 13.9 0.0 22 44 259 281 247 288 0.88 7 9 0.00036 4.5 7.9 0.1 16 51 321 356 319 358 0.85 8 9 0.00012 1.5 9.5 0.6 21 48 354 381 353 386 0.90 9 9 0.027 3.4e+02 1.9 0.3 24 48 387 411 382 415 0.86
Sequence Information
- Coding Sequence
- ATGGAGCAAATGGACCAAGAAATAGAGCAGATCTACATAAAACCGGACATAGCTCACCTGAAGGTGGAGGTGAACTGTGAGCAGGAGCGCGGAGACCCCTACCAGCCGCCGGAGCACGCCTTCAGCGCCAAGGACGAAGACAACCTACCCTCAAATACGTATGAACACTCCAACGACTATGACAATCCAAGAGCTAAAGACTCCATTGAGATAGTCGGTAAAGTGTATGAGAACGGAAAAATAAATAGACTTCAATGCCCACAGTGTGATAACAATTTCAAAAACCGCGCAAATTTGAAGCAGCATCTCAAATTCGTGCATTCGTCCGAAGATGACATAGTAGAGTGTGAGAAATGTTACAGGACTTTCAAATCCGTAGGTCACTTAAGGTCGCACATCCACTCCGTTCATGCTGAAGAGAAAGAAGTCACTTGCGAGCATTGCGGCAAAGTGTTCTTGAACAAGAAACGTCTCAACAATCACATATTCTACGCTCACCCGGAACCAGAGGAAAGCGTCAATTGTAGCATATGTTCTAAAGCTTTCAAGCGGAGATATAACTTGAAAATACATATGAGACTCGTCCATCCTTCGGAAGACAGTTCCGTGCAATGCCCACACTGTGATAAGAGGTTTAAAGTGGACATGTTACTGCAGAGACATATAAAGTGGAGTCACCCGCAAGACGGGATGATGTACAGATGCCCGGAATGCGGCCGGACGCTGCCGTCCATCGCTTGCTTCAGAAAACACATGCAAAACGTACATTCCGGATCTCAGGATGCTATTTGTAAAATCTGCTATAAAGTTTTCAAAACCGTTAAAACTTTGAAGAGACACGAAAAGAATATACATGGTGGAGAGAAAGTTGAGGCCAAACCGTGCAAAGTAGGAGACATACCGTGTTCGCAGTGCGACAAGAAATTTACGACAAACACAGCATTATTCTGGCATTTTGAGCGACACCACTCTGAGAATAAAAGGAGCAATGCTTGTCAAGTGTGCGGTAAAGAGCTATCGGACCAGGGAAGTCTGAAAAGGCATCTAGAAATGGTGCATTCATTTGAGCCTTCAAACTGTCACATATGCTCAAAGACTTTTAAAAGCCAGATGAACCTGCAGAGGCATATTAGAGTGACGCACGCCCCGCCCGAAGCCGCACAAAACTGCGATGTTTGCCAAAAAACTTTCAAATGCTCAATGCATTTACGCATACATATAAACACGGTGCATTCAACTGAAGGCACCTTCCACTGTGATGTATGTAATAAAGAGTTTTCTTCCAAGAAATACATGTTGAAACATAAGAAAACTCATGTAGATGTTAAACTGTTCCCCTGTGGTGTATGTAATAAGTTATTCAAATGTGTGAACGACGTTAAGAAACACGCAAAGCGAGTGCATTTGAAAGCAGTAGTCAAAACTGAAAACGAAGAATGTACGGACAAAAATACAGAAGATGTTAACGGCACAGAGGCACTGAACTGTCTGAAATGTGGTTGTGATTTCGAAAACGAGGCAGAGTTACACTCTCATATTTTGAATTGTAGTGAACTCCCGGCGATGGCTTTTGTGAAGGTAGAATTTCAGGACATGTAG
- Protein Sequence
- MEQMDQEIEQIYIKPDIAHLKVEVNCEQERGDPYQPPEHAFSAKDEDNLPSNTYEHSNDYDNPRAKDSIEIVGKVYENGKINRLQCPQCDNNFKNRANLKQHLKFVHSSEDDIVECEKCYRTFKSVGHLRSHIHSVHAEEKEVTCEHCGKVFLNKKRLNNHIFYAHPEPEESVNCSICSKAFKRRYNLKIHMRLVHPSEDSSVQCPHCDKRFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAICKICYKVFKTVKTLKRHEKNIHGGEKVEAKPCKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNACQVCGKELSDQGSLKRHLEMVHSFEPSNCHICSKTFKSQMNLQRHIRVTHAPPEAAQNCDVCQKTFKCSMHLRIHINTVHSTEGTFHCDVCNKEFSSKKYMLKHKKTHVDVKLFPCGVCNKLFKCVNDVKKHAKRVHLKAVVKTENEECTDKNTEDVNGTEALNCLKCGCDFENEAELHSHILNCSELPAMAFVKVEFQDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00656369;
- 80% Identity
- iTF_00659639;