Dvii001788.1
Basic Information
- Insect
- Drosophila virilis
- Gene Symbol
- retn
- Assembly
- GCA_007989325.2
- Location
- CM017608.2:7559147-7585585[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.7e-26 7.4e-23 80.4 0.0 2 89 329 414 328 414 0.96 2 3 3.2 6.5e+03 -2.7 0.2 15 15 571 571 543 615 0.53 3 3 4.3 8.5e+03 -3.1 0.2 57 80 683 707 680 711 0.65
Sequence Information
- Coding Sequence
- ATGCAACTCCGAGTGCATCCGACTATGGATTGCAGCGGCCGTTCAAATAACAATATTGAACGCGATTCCGATTTGGGTGACGATTTGTCCCACGGCGATCGCACGGATGACGAGATGCGCGACTGCGATTCCGTCGACGGTGAACATCATCAGCTGAGTGCCAAGGCAGCAATTGCCGCACGTCTCAGTCACACAGTCGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCCGAGCAGCAAACAGATCTGCCACTCAGccATCACCATCAACTGCCGCCGAATCATCCGCTTAACGCGCTGGGCAGCTTCATGGGCATCGGCGGCCTACACAGCATTCCAAATCTACAGCACAGCGATGTTCTCGAGAAGCTCAAGATGCAAGTACGCGACATGAAAGTGGGTCTCATGGAACAGGACTATGCAGCAGCGGCCCATGCGGCCGCCTTTGGCGCCAATATGCTGCCCACAACGATCAGCACGGCCTTTCCGCTGCCGCACAATTCGGTGGCAGCGGCCGCGGCAGCTGCGTCCTTTGGCCATGCGGCCAATGCGTCCGTGCCGCCAGCCAGCAACGGCGCCAGCTACAATGGTGCAACTCTTGGcacaggagcagctgcagcaatggGCAGCACTGGCGCCGGCAACAATAATGGGGCCAGCAGCGGTACAGGTGGAGGCACtgccgccaacaacaacaacaacagcagcaacaacaacagcaatgcggCTGGAAATGctggtggcaacaacaacaacaacagcagcagcagcaacaacaacaatgccggCAATGGACATCCCTTCTCGTTTGCATCGCCGACAGCGCCGAGCGCCAAAGAAGCGCGCCACTTTGCAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATGATTTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTGTATGAGCTATATAATCTGGTGATAGCCCGCGGCGGCCTTGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGGCTGCATCTGCCCTCGAGCATCACCAGTGCCGCATTCACGCTGCGCACACAATACATGAAGTATCTGTACCCTTACGAGTGCGAGAAGAAGAACCTGAGCACACCCGCCGAGCTGCAGGCGGCCATTGATGGCAATCGACGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCGCTGACGCCCATTTCGCGACCACCGCTGCCGGGTGGCATGCAACAGATGTCACCCCTGGCGCTGGTCACACACGCCGCCGCGGCCAACAATCAGCAGGcgcaggcagcggcagccgccgccgcagcgcaCCGCCGTCTGATGGGCGGCCCGCCATTTGGCCAGATGCCCAATCTGGTCACACAGGAGATTGAGAATCGCATGATGGAGTATCTGCAGCTGATACAGGCCAAGAAGGAGCAGAGTGCGCCAGGGCTGCCACAcaaccatcagcagcagcagcaacagtcgctGCATcatcaccaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcaacagcagcagcagcagccgcggcaGCGCTCACAAAGCCCAGAGCTGAGCACGCGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCTCTGAACCTGTCGGACTCGCCGCCAACTCTTAATCTGAACCACATAAAACGTGAACGCGAACGCGATCCGACGCCTGAGCCGGCTGATCAGGAGGATGCACCGCATCAGCCACCGCCAGCGAAACGGGTGGGCAGCGGCCTGATGCCACCCGGTTTCCCGGCGAACTTTTACTTGAATCCACACAATATGGCCGCCGTGGCAGCGGCCGCGGGCTTCCACCACCAGCAAcaggccaacagcaacagccaccatcagctgcatcagcagcaccagcagctgcagcagcaacaggatgCCGCCTCCGATGGCGAACCAGAGGATGACTATGCCAATGCGGAGCACAATACCACCGGCAATTCGTCCTCGTTGCACGACGACAGCGAACCGCAGCAGCTGAACGGGCACCACCACCATCATCTGCatcaccaccaccagcaccaccatcATTCGCATCATCAGAACCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCACTTCCACAACAGCATCGGCTTCGGGTGGCGGCCATCGTCACAGCTCGCCGGTCTCCACCAAGAAGAAGAGTAGCGGGAGCAAGGCGCAGTCCAGCTCGAAGGACGGCAGCTGCACAACTGAAgggggcggcggcagcggcagcggcagcaacagcggggGCATAACCGGAGCCGGCGTTAAGCTGAATCCCCTCGAGACACTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGCGCAAACGGCGAACAGCAGCTGATTGTCAATCTGGAGCTGAATGGCATTAAGTACTCGGGTGTGCTGGTGGCCAATGCAGCCGGGCCCGAGCAGAACGACCAGCCGGACACAGATGCGGACGCCGAGACACCCACAGCTGCCGAGGAGCCGGCGCACGACGAGGCTGCTCACGATGCCAGCCAGGAGTGCAGCCAGAACGAGGCaatcgacgacgacgaggaggaggatgatgaggagcagacgcagcagcagcagcagcagcacacggAGGATATCGTGAATGGCAGCAGTGCGGTCGGTGTTGGTACGGGTGCgggtgtgggtgtgagtgtgGGCGTTGGATTGGGCACGGTGGGCGTGTCTCTGCTAAAAGATGCGGTGGTCAGCTCGTAA
- Protein Sequence
- MQLRVHPTMDCSGRSNNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISTAFPLPHNSVAAAAAAASFGHAANASVPPASNGASYNGATLGTGAAAAMGSTGAGNNNGASSGTGGGTAANNNNNSSNNNSNAAGNAGGNNNNNSSSSNNNNAGNGHPFSFASPTAPSAKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPPFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAPGLPHNHQQQQQQSLHHHQQQQQQQQQQQQQQQQQQQQQPRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADQEDAPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQQQANSNSHHQLHQQHQQLQQQQDAASDGEPEDDYANAEHNTTGNSSSLHDDSEPQQLNGHHHHHLHHHHQHHHHSHHQNHLDKSDDSAIENSPSTSTTASASGGGHRHSSPVSTKKKSSGSKAQSSSKDGSCTTEGGGGSGSGSNSGGITGAGVKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVANAAGPEQNDQPDTDADAETPTAAEEPAHDEAAHDASQECSQNEAIDDDEEEDDEEQTQQQQQQHTEDIVNGSSAVGVGTGAGVGVSVGVGLGTVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- iTF_00490564; iTF_00562963; iTF_00526360; iTF_00505892;
- 80% Identity
- -