Dnov005988.1
Basic Information
- Insect
- Drosophila novamexicana
- Gene Symbol
- retn
- Assembly
- GCA_003285875.3
- Location
- NW:1815321-1841978[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.7e-26 6.7e-23 80.4 0.0 2 89 335 420 334 420 0.96 2 3 3.8 6.9e+03 -2.9 0.1 21 39 578 601 550 614 0.51 3 3 4.2 7.7e+03 -3.1 0.2 57 80 682 706 679 710 0.65
Sequence Information
- Coding Sequence
- ATGCAACTCCGAGTGCATCCGACTATGGATTGCAGCGGCCGTTCAAATAACAATATTGAACGCGATTCCGATTTGGGTGACGATTTGTCCCACGGCGATCGCACGGATGACGAGATGCGCGACTGCGATTCCGTCGACGGTGAACATCATCAGCTGAGCGCCAAGGCGGCAATTGCCGCACGTCTCAGTCACACAGTCGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCCGAGCAGCAAACAGATCTGCCACTCAGccATCACCATCAACTGCCGCCGAATCATCCGCTTAACGCGCTGGGCAGCTTCATGGGCATTGGCGGCCTACACAGCATTCCAAATCTCCAGCATAGCGATGTTCTCGAAAAGCTCAAGATGCAAGTGCGTGACATGAAAGTGGGTCTCATGGAACAGGACTATGCAGCAGCGGCCCATGCGGCCGCCTTTGGCGCCAATATGCTGCCCACAACGATCAGCACGGCCTTCCCGCTGCCGCACAATTCGGTGGCAGCGGCCGCGGCAGCTGCATCCTTTGGCCATGCGTCCGTGCCGCCAGGCAGCAACGGCGCCAGCTACAATGGTGCAGCTCTTGGcacaggagcagctgcagcaatggGCAGCGCTGGCGCCGGCAACAATAATGGAGCCAGCAGCGGCACAGGTGGAGGCAGcgccaccagcaacaacaacaacaacaacagcagcagcagcaacaacaatgcggctGGAAATGCtggtggcaacaacaacagcagcagcagcagcaacaacaataacaacaacaacaacaacaacaacaatgccggCAATGGGCATCCCTTCTCGTTTGCATCGCCGACAGCGCCGAGCGCCAAAGAAGCGCGCCACTTTGCAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATGATTTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTGTATGAGCTATATAATCTGGTGATAGCCCGCGGCGGCCTTGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGGCTGCATCTGCCCTCGAGCATTACCAGTGCCGCATTCACGCTACGCACACAATACATGAAGTATCTGTACCCTTACGAGTGCGAGAAGAAGAACCTGAGCACACCCGCCGAGCTGCAGGCGGCCATTGATGGCAATCGGCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCGCTGACGCCCATTTCGCGACCACCGCTGCCGGGTGGCATGCAACAGATGTCACCCCTGGCGCTGGTCACACACGCCGCCGCGGCCAACAATCAGCAGgcgcaggcagcggcagccgccgccgcagcgcATCGACGTCTGATGGGCGGCCCGCCATTTGGCCAGATGCCCAATCTGGTCACACAGGAGATTGAGAATCGCATGATGGAGTATCTGCAGCTGATACAGGCCAAGAAGGAGCAGAGCGCGCCAGTGCTGCCACAcaaccatcagcagcagcagcaacagtcgctgCATcatcaccaacaacaacaacaacagcagcagcagcaacagcagcagcagccgcggcaGCGCTCACAAAGCCCCGAGCTGAGCACGCGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGTAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCTCTGAACCTGTCGGACTCGCCGCCAACTCTCAATCTGAACCACATAAAACGTGAACGCGAACGCGATCCGACGCCTGAGCCGGCGGATCAGGAGGATGCACCGCATCAGCCGCCGCCGGCGAAACGGGTGGGTGGCGGCCTGATGCCGCCCGGTTTCCCGGCGAACTTTTACTTGAATCCACACAACATGGCCGCCGTAGCAGCCGCCGCGGGCTTCCACCACCAGCAAcaggccaacagcaacagccaccatcagctgcatcagcagcaccagcagctgcagcagcagcaggatgcCGCGTCCGATGGCGAGCCAGAGGATGACTATGCCAATGCGGAGCACAATACCACCGGTAATTCGTCCTCATTGCACGACGACAgcgagccgcagcagctgaacgggcaccaccaccaccatctgcatcaccaccaccagcaccaccatcATTCGCATCATCAGAACCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCACTTCCACAACAGCATCGGCTTCGGGCGGCGGCCATCGTCACAGCTCGCCGGTGTCCaccaagaagaagagcagcgGGAGCAAGGCGCAGTCCAGCTCGAAGGACGGCAGCTGCACAACAGAAGggggcggcagcagcggcagcggcagcagcagcgggggCATAACCGGAGCCGGCGTTAAGCTGAATCCCCTCGAGACACTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGCGCAAACGGCGAACAGCAGCTGATTGTCAATCTGGAGCTGAATGGCATTAAGTACTCGGGTGTGCTGGTGGCCAATGCAGCCGGCCCCGAGCAGAGTGACCAGCCGGACACAGATGCGGACGCCGAGACGCCCACAGCTGCCGAGGAGCCGGCGCACGACGAGGCCGCCCACGATGCCAGCCAGGAGTGCAGTCAGAATGAGGCAATcgacgacgaggaggaggaggatgatgaggagcagacgcagcagcagcagcagcacacggAAGATATTGTGAATGGCAGCAGTGCGGTCGGTGTgggtgcgggtgcgggtgtgggtgtgagtgtgggcGTTGGATTGGGCTCGGTGGGCGTGTCTCTGCTAAAAGATGCGGTGGTCAGCTCGTAA
- Protein Sequence
- MQLRVHPTMDCSGRSNNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISTAFPLPHNSVAAAAAAASFGHASVPPGSNGASYNGAALGTGAAAAMGSAGAGNNNGASSGTGGGSATSNNNNNNSSSSNNNAAGNAGGNNNSSSSSNNNNNNNNNNNNAGNGHPFSFASPTAPSAKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPPFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAPVLPHNHQQQQQQSLHHHQQQQQQQQQQQQQQPRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADQEDAPHQPPPAKRVGGGLMPPGFPANFYLNPHNMAAVAAAAGFHHQQQANSNSHHQLHQQHQQLQQQQDAASDGEPEDDYANAEHNTTGNSSSLHDDSEPQQLNGHHHHHLHHHHQHHHHSHHQNHLDKSDDSAIENSPSTSTTASASGGGHRHSSPVSTKKKSSGSKAQSSSKDGSCTTEGGGSSGSGSSSGGITGAGVKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVANAAGPEQSDQPDTDADAETPTAAEEPAHDEAAHDASQECSQNEAIDDEEEEDDEEQTQQQQQHTEDIVNGSSAVGVGAGAGVGVSVGVGLGSVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- iTF_00616689;
- 80% Identity
- -