Dtro001337.1
Basic Information
- Insect
- Drosophila tropicalis
- Gene Symbol
- -
- Assembly
- GCA_018151085.1
- Location
- JAECWH010000574.1:4410688-4413978[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.1e-12 1.3e-08 34.4 0.0 1 40 344 384 344 387 0.90 2 4 2.6e-13 4.9e-10 39.0 0.1 2 39 399 436 398 439 0.94 3 4 1.6e-16 3e-13 49.3 0.0 1 45 453 498 453 498 0.98 4 4 9.2e-20 1.7e-16 59.7 0.0 1 43 505 548 505 549 0.97
Sequence Information
- Coding Sequence
- ATGACTAGTTTAGGCATGGGATTGAATGGCGGCCTATTGGGCGTACCCATGGGTTTTCTGGACTTTACACCCGAACCACCAGCACCATCAGCCACACCAGTCACTGTAACGGAACATGTCGATATCTCCTGCAATCCAAGCACAGATACGCGAGATCTATCAAATCCCACCGAACCGCTTGACATTGACAATCATTTGGCGCAACAAATCCATCGGCTCGATCAATCTCCCATGCATTCAATAGCCCATCATCATACGGGGGATGAGAGTAATTCAAATTTGGTGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGGACACGTGACGCATGCGGATATTGGTGGCGCAACTGTCATGGAGATTGATCCGAGCCAGATAAAGCATGAACCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCTCCGGTCATATGGATATGTACAATTCAGATACGAGCGAGGATTCCATGATGATTGCCAATGGCTCACCGCACGATCAAAAGGAGCCGCACTATACGAATTTGGATCAGAAACACGGAATACTTGGCGGCAGCGGAATTTGCGGACCGGGTGGTGCTGGTGGTGGTGGTGGTAGTGGTGGTAATGGTGGTGGTGTGGCTGGTGGTGTTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCCGCCATATATGGTATACCATCGACCACCCTATGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACAAAATCATGGAACGAGGATGCATTACAAAATGCCTTGGAGGCATTACGTGCGGGTCAAATATCCGCCAATAAGGCATCGAAAGCCTTTGGTATACCGTCATCGACATTGTACAAAATTGCCCGACGTGAGGGCATCAGATTGGCAGCACCATTCAATGCCGCACCAACAACATGGACGCCGGAGGATTTGGAACGGGCATTGGTGGCAATCCGAGCGGGTAATACATCGGTGCAAAAAGCAAGTGCCGAATTTGGCATACCAACAGGCACACTTTATGGACGCTGCAAACGCGAAGGGATTGAATTGTCGCGTTCAAATCCTACACCCTGGTCTGAGGATGCCATGAATGAGGCCCTGAACTCAGTTCGTGTTGGCCAAATGTCAATCAATCAGGCGGCCATTCATTATAACCTGCCCTATAGTTCACTCTATGGGCGCTTTAAGCGTGGCAAATACGATGTTGTGGCCAATACCAGCGGAGTTTCGCTATTGAATACCTCAGGCAACACAACTGGAAGCATTGAGATTATTGAGCATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTTCCGTACAGTCCGTCACCGCATCCACCAACGCCACAGCATCATAGTACACCGCAACAGCATCACAGCAGCTCTCAGCAAGGACCACCAACGCCACAGCATATGCAGCAACAGCATGTGGTCCATATGCAGTCGCCACATCAGGGTCATATGGCAACGGGTCATATGCAACAGGATGTGGTTACCTCAAGTAGCCAAGTGGTGCACGGCCAGCCGCAGCAACTTCAACAGATCTATCAGCATCATGGTACGCCCGAGCGTAGTTGA
- Protein Sequence
- MTSLGMGLNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDISCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQKHGILGGSGICGPGGAGGGGGSGGNGGGVAGGVAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRAGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALVAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQQHHSSSQQGPPTPQHMQQQHVVHMQSPHQGHMATGHMQQDVVTSSSQVVHGQPQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01323298; iTF_01550919; iTF_01550202; iTF_00618316; iTF_01552375; iTF_00584347;
- 90% Identity
- iTF_00618316;
- 80% Identity
- -