Zgab001290.1
Basic Information
- Insect
- Zaprionus gabonicus
- Gene Symbol
- -
- Assembly
- GCA_018903695.1
- Location
- JAEIFO010000401.1:9182545-9185715[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-12 8.3e-09 34.9 0.0 1 41 316 357 316 360 0.90 2 4 2.8e-14 6.4e-11 41.6 0.1 2 39 371 408 370 411 0.94 3 4 4.9e-18 1.1e-14 53.7 0.0 1 45 425 470 425 470 0.98 4 4 3.1e-20 7.2e-17 60.7 0.0 1 43 477 520 477 522 0.96
Sequence Information
- Coding Sequence
- ATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTTACCGTAACGGAACACGTCGATTTATCGTGCAATCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATTCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATACGACCGGAGACGAGAGCAACTCGAATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGCCACGCATGCGGAAATCAGCGGTGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAACACGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACTGGGCATATGGATATGTACAACTCGGATACGAGCGAGGATTCGATGATGATTGCCAACGGTTCGCCGCACGATCAAAATGAACCGCACTATACGAATTTGGATCAGCAACACGGCGGCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCCTCGACAACATTATGGCAACGTGCACATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGTACCAAATCATGGAATGAGGATGCCTTACAGAGTGCACTGGAGGCATTGAGATCGGGTCAGATATCAGCTAATAAAGCATCCAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATAGCGCGTCGGGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGTGCTGGCAATACGTCGGTGCAAAAAGCGAGTGCCGAGTTTGGCATACCAACAGGAACACTCTATGGACGCTGCAAACGGGAGGGCATCGAACTTTCACGTTCGAATCCAACACCTTGGTCCGAAGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAGATGTCCATCAATCAGGCGGCCATACACTATAACCTGCCCTACAGTTCGCTCTACGGGCGCTTCAAGCGCGGCAAATACGATGTGGCCAACACCAGCGGAGTCTCGTTGCTTAACGCTTCGGGCAACACCACCGGCAGCATTGAGATTATTGAACATAGTCAGGAGAATTCGGTAGGTTAA
- Protein Sequence
- MTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTTGDESNSNLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHATHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQSALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGVSLLNASGNTTGSIEIIEHSQENSVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611989;
- 90% Identity
- iTF_01550919;
- 80% Identity
- -