Dqud000115.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- -
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000407.1:990369-994337[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-12 8.2e-09 34.9 0.0 1 41 304 345 304 348 0.90 2 4 2.4e-14 4.8e-11 42.0 0.1 2 39 359 396 358 399 0.94 3 4 5.5e-18 1.1e-14 53.7 0.0 1 45 413 458 413 458 0.98 4 4 5.6e-20 1.1e-16 60.1 0.0 1 43 465 508 465 509 0.97
Sequence Information
- Coding Sequence
- ATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGAACGTGCCCATGGGATTTCTGGACTTTCCACCGGAGCCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAGCATGTGGATCTATCGTGCAACCCCAGCACCGACACACGCGATCTATCAAATCCCACCGAACCGCTCGATATAGACAATCATTTGGCCCAACAGATCCATCGGCTCGATCAATCTCCCATGCATTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCACACATGCTGAGATTGCTGGCGCCACAGTCATGGAGATTGATCCCAGCCAAATCAAGCACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCACAGGGCATATGGACATGTACAACTCGGATACGAGCGAGGATTCGATGATGATCGCGAATGGTTCACCGCACGATCAGAATGAGCCGCACTATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGTCCCTGACGAAAGCATCTGCCATATATGGCATACCATCGACCACGCTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAATCATGGAATGAGGATGCCCTACAGAATGCCTTGGAAGCGTTGCGTTCGGGACAGATCTCGGCGAATAAAGCATCCAAGGCATTTGGCATACCATCGTCGACGTTGTATAAGATTGCCCGGCGCGAGGGCATACGCTTGGCGGCGCCATTCAATGCCGCACCAACCACATGGACACCAGAGGATTTGGAGCGCGCCTTGGAGGCAATCCGGGCCGGTAATACCTCAGTACAGAAAGCGAGCGCTGAGTTTGGTATACCCACAGGAACACTTTATGGACGCTGCAAACGGGAGGGTATTGAATTGTCACGTTCGAACCCAACACCTTGGTCCGAGGATGCTATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACATTATAACCTGCCCTACAGCTCCCTCTATGGGCGCTTCAAGCGTGGCAAGTACGATGTTGTGGCAAATACAAGTGGCGTCTCGCTGATGAACACATCGGGCAATACGACAGGCAGCATTGAGATTATTGAGCATAGTCAAGAGAATTCGGTAAGCGGATGA
- Protein Sequence
- MTSLGMGMNGGLLNVPMGFLDFPPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATHAEIAGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLMNTSGNTTGSIEIIEHSQENSVSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611989;
- 90% Identity
- -
- 80% Identity
- -