Zcap008514.1
Basic Information
- Insect
- Zaprionus capensis
- Gene Symbol
- -
- Assembly
- GCA_018903675.1
- Location
- JAEIFN010000798.1:434081-437506[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-12 8.4e-09 34.9 0.0 1 41 314 355 314 358 0.90 2 4 2.8e-14 6.5e-11 41.6 0.1 2 39 369 406 368 409 0.94 3 4 4.9e-18 1.1e-14 53.7 0.0 1 45 423 468 423 468 0.98 4 4 3.1e-20 7.3e-17 60.7 0.0 1 43 475 518 475 520 0.96
Sequence Information
- Coding Sequence
- ATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTTACCGTTACGGAACACGTCGATTTATCGTGCAACCCCAGCACTGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATTCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCACACGACCGGAGACGAGAGCAACTCGAATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATGGAGATTGATCCGAGCCAGATCAAACACGAGCCGGGCATGATTATAACGCCCGAGATTGTCAATATGATGTCCACTGGGCATATGGATATGTACAACTCGGATACGAGCGAGGATTCGATGATGATTGCCAACGGTTCGCCGCACGATCAAAATGAACCGCACTATACGAATTTGGATCAGCAACACGGCGGCTTGGGTGGCAGTGTTTGTGGCCCCGGCGCCGGTGGTGTTGGTGGTGGTGGTGGCGGTGGCGGCATTGGTAGTGGTGGTGGTGGTAATGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCCTCGACAACATTATGGCAACGTGCACATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGTACCAAATCGTGGAACGAGGATGCCTTGCAGAGTGCACTGGAGGCATTGAGATCGGGCCAGATATCAGCTAATAAAGCATCCAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATAGCGCGTCGGGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGTGCTGGCAATACGTCGGTGCAAAAAGCGAGTGCCGAATTTGGCATACCAACAGGAACACTCTATGGACGCTGCAAACGGGAGGGCATCGAACTTTCACGTTCGAATCCAACACCTTGGTCCGAAGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAGATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGGCGCTTCAAGCGGGGCAAATACGACGTGGCCAACGTGAGCGGAGTCTCGTTGCTTAACGCTTCGGGCAACACCACCGGCAGCATTGAGATTATTGAACATAGTCAGGAGAATTCGGTAGGTTAA
- Protein Sequence
- MTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTTGDESNSNLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGGGGIGSGGGGNAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQSALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANVSGVSLLNASGNTTGSIEIIEHSQENSVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611989;
- 90% Identity
- iTF_01552375; iTF_01550202;
- 80% Identity
- -