Shsu017222.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- -
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000044.1:321324-331784[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-12 1.1e-08 34.8 0.0 1 40 292 332 292 335 0.90 2 4 2.2e-14 6.2e-11 42.0 0.1 2 39 347 384 346 387 0.94 3 4 5e-18 1.4e-14 53.6 0.0 1 45 401 446 401 446 0.98 4 4 5.1e-20 1.4e-16 60.0 0.0 1 43 453 496 453 497 0.97
Sequence Information
- Coding Sequence
- ATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCTACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCTACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCATTCAATAGCGCATCATCATTCAACCGGCGACGAGAGCAACTCGAATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAAGTGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGAATGAGCCGGGTATGATTATAACGCCTGAGATTGTCAACATGATGTCCACCGGACATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCGAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCCGCCATTTACGGCATACCATCAACGACCTTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCCTGCAAAATGCCTTGGAGGCATTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCCAAAGCGTTTGGTATTCCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATTCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTAGAGGCGATACGCGCTGGCAATACGTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAGCGGGAAGGCATCGAACTATCTCGTTCGAATCCAACTCCTTGGTCCGAGGATGCAATGAACGAGGCATTAAACTCAGTGCGCGTCGGTCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCATACAGTTCACTCTACGGACGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACCAGTGGTGTCTCGCTTAATAACACCTCGGGTAATACGACCGGCAGCATTGAGATAATCGAGCATAGCCAGGAAAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGCCGCCCCATCCAGTTCTTCGCGTCGAATCCGGTTCAGGCCCATTTCGTAAGGTTTTCAAGATATTCTAA
- Protein Sequence
- MTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHSTGDESNSNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGATVMEIDPSQIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPPPHPVLRVESGSGPFRKVFKIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611989;
- 90% Identity
- -
- 80% Identity
- -