Dsuz003203.1
Basic Information
- Insect
- Drosophila suzukii
- Gene Symbol
- svp
- Assembly
- GCA_013340165.1
- Location
- WWNF01000033.1:278402-297580[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.15 8.2e+02 -1.0 0.2 122 163 5 45 3 60 0.66 2 2 1.3e-44 7e-41 140.8 0.1 211 404 193 383 176 388 0.93
Sequence Information
- Coding Sequence
- ATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTGACCAGCATCAAGGGACAGCCCACCGGTTGCGGCAGCACCACGCCCAGCTCCCAGGCCAACAGCTCCCACTCGCAGAGCAGCAACAGCGGATCCCAGATCGACAGCAAGCAGAACATCGAGTGCGTCGTTTGCGGCGACAAGAGCTCCGGCAAGCACTACGGACAGTTTACCTGCGAAGGCTGCAAATCTTTCTTCAAGCGCTCGGTGCGACGCAATCTCACCTACTCATGCCGCGGCAGCAGAAACTGTCCCATAGATCAGCATCATCGCAATCAATGTCAATATTGCCGATTGAAGAAGTGCCTCAAAATGGGCATGCGACGCGAAGCTGTCCAACGTGGCCGCGTTCCCCCTACACAGCCCGGTCTGGCCGGCATGCATGGCCAGTACCAGATCGCCAACGGGGATCCCATGGGCATCGCCGGCTTCAACGGGCACTCGTACCTCAGTTCCTACATCTCGCTGCTCCTGCGGGCGGAACCGTATCCCACCTCGCGATATGGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGACAACATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCAGTTGAGTGGGCCAAGAACATACCCTTCTTCCCGGAACTTCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTCGTCTGGTCGGAGCTGTTCGTCCTGAACGCCAGCCAGTGCTCCATGCCGCTCCACGTGGCCCCGCTGCTGGCCGCCGCCGGACTGCACGCCTCCCCGATGGCCGCCGACCGGGTGGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTGAAGGCCCTGCATGTCGACTCCGCGGAGTACTCCTGCCTCAAGGCCATCGTGCTGTTCACCACCGATGCCTGCGGCCTGTCCGATGTGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCCTCGAGGAGTACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGCAAGCTGCTGCTCAGGTTGCCATCGCTGAGAACTGTCTCCTCACAAGTCATCGAGCAATTGTTTTTTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGCTGATACGCGACATGCTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTGCCTTCGATGTGA
- Protein Sequence
- MLPLIKGHGQDMLTSIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIAGFNGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYLPSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00604891; iTF_00604863; iTF_00132001; iTF_00132033; iTF_01003553; iTF_01355329; iTF_01477603; iTF_00014756; iTF_00014788; iTF_00417668; iTF_01048260; iTF_00730085; iTF_01120229; iTF_01523397; iTF_00200774; iTF_00016071; iTF_00265031; iTF_01520263; iTF_00398120; iTF_01261864; iTF_00728681; iTF_00728713; iTF_01048297; iTF_00181323; iTF_01003563; iTF_01003595; iTF_01228397; iTF_01355341; iTF_00417583; iTF_01355503; iTF_00200784; iTF_00730096; iTF_00905458; iTF_00317491; iTF_01120275; iTF_01228437; iTF_01477685; iTF_00131990; iTF_01477590; iTF_00730135; iTF_00014744; iTF_00181336; iTF_00317528; iTF_01228408; iTF_01520344; iTF_01523385; iTF_00181370; iTF_00265082; iTF_00417594; iTF_01048250; iTF_00200859; iTF_00265019; iTF_01520251; iTF_00016061; iTF_00016093; iTF_00317501; iTF_01523453; iTF_01261856; iTF_01261888; iTF_00452612; iTF_00452601; iTF_00452639; iTF_01087236; iTF_01087290; iTF_01087227; iTF_00898853; iTF_00898767; iTF_00898778; iTF_00828808; iTF_00828845; iTF_00828818; iTF_01270538; iTF_01270589; iTF_01270526; iTF_01379252; iTF_00769654; iTF_00798614; iTF_01382945; iTF_01382988; iTF_01382942; iTF_01382155; iTF_01382107; iTF_01382109; iTF_00340612; iTF_00340675; iTF_00582981; iTF_00582990; iTF_00583008; iTF_01233062; iTF_01233031; iTF_01234376; iTF_01233022; iTF_01232449; iTF_01232424; iTF_01232434; iTF_01559783; iTF_01559792; iTF_01559806; iTF_00245485; iTF_00246352; iTF_00246391; iTF_00245432; iTF_01099213; iTF_01099304; iTF_00973135; iTF_00973070; iTF_01435065; iTF_01434980; iTF_00145690; iTF_00145619; iTF_00201693; iTF_00201752; iTF_01095870; iTF_01095841; iTF_00143903; iTF_00143938; iTF_01037033; iTF_01037042; iTF_01037087;
- 90% Identity
- iTF_00604891; iTF_00604863; iTF_00582981; iTF_00582990; iTF_00583008; iTF_00245485; iTF_00246352; iTF_00246391; iTF_00245432; iTF_00362588; iTF_00362566;
- 80% Identity
- iTF_00604891; iTF_00604863; iTF_00604864; iTF_00604892;