Nvit010488.1
Basic Information
- Insect
- Nasonia vitripennis
- Gene Symbol
- svp
- Assembly
- GCA_009193385.2
- Location
- NW:107858-314467[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.16 6.8e+02 -1.1 0.0 264 289 203 228 199 240 0.78 2 2 4.3e-44 1.8e-40 139.1 0.2 212 404 261 450 244 455 0.93
Sequence Information
- Coding Sequence
- ATGGCGATGGTAGCTCCATCACCTAGTTGGGCAACACGGGATTCTTCTACTGTGCTCAGTAATATTTGCAACaattctgtaaataatcaaACAGAGTCTAATGTTTCGATGCCTCCAACCAATTTGATTTCACCAGCAGTGACTGAAGATATAGCGTGCTTAATGTCCTCTGGATCTATTGCCGCTTCTCGAGATTTGTTGCAACAAAGTGCGACGCCTGGACACCAAGTAAATCAGTCTGgtaattcacaaacagacaaATCATCGAATATTGAATGCATAGTTTGTGGTGATAAAAGCAGTGGGAAACATTATGGACAATTCACGTGCGAGGGTGTAAAAAGAAATGTTCGTGTAGACACACACGCACTGATGAGGCACCGTTTCGTTTCACTTGTATCTTTAAGcatacgtatagGATGCAAGAGTTTTTTCAAACGAAGTGTTCGTAGAAATCTATCATATTCGTGTAGGGGTAATCGAAACTGTCCTATTGATCAACATCACAGAAATCAGTGCCAATATTGTCGACTAAAAAAGTGTCTGAAAATGGGTATGCGGCGAGAAGCTGTTCAAAGAGGCCGAGTTCCACCCTCACAGCAAAGTCACCCTGGAGCTACAGGACAATTTACTTTGACAAATGGAGATTCCGTGTCCTGTTCTAGTATAAATGGACATTCATACTTATCTTCTTACATAAGCTTATTATTGAGAGCTGAGCCATATCCTAATTCTCGGTACAGTCAATGTATGCAACCTAATAACATTTTAGGTATCGATAATATCTGCGAACTTGCTgctagattattattttctgctGTAGAATGGGCAAAAAACATACCTTTTTTTCCTGACCTCCAAGTAACTGATCAAGTTGCTCTATTAAGACTTGTTTGGAGCGAATTGTTTGTATTGAATGCAAGTCAATGCTCTATGCCATTACATGTAGCACCACTTTTGGCAGCTGCTGGACTCCATGCATCACCGATGGCTGCTGACCGGGTCGTAGCTTTTATGGATCACATACGAATATTTCAAGAAcaagttgaaaaattaaagGCATTACACGTCGATTCAGCAGAATACAGCTGTCTTAAAGctattgttttatttacaaCAGATGCTTGTGGACTATCTGATGTGTCGCACATAGAATCACTCCAAGAAAAATCTCAATGCGCTCTTGAAGAATATTGTCGAACGCAATATCCAAATCAACCAACAAGATTTGGAAAACTACTGTTGAGATTGCCTTCGCTAAGAACTGTATCCTCTCAAGTGATTGAGCAACTGTTTTTTGTGCGACTAGTGGGTAAAACGCCAATTGAAACACTTATTAGAGACATGCTTCTCAGTGGTAGCAGCTTTAATTGGCCGTATATATCGTCCGCGTGA
- Protein Sequence
- MAMVAPSPSWATRDSSTVLSNICNNSVNNQTESNVSMPPTNLISPAVTEDIACLMSSGSIAASRDLLQQSATPGHQVNQSGNSQTDKSSNIECIVCGDKSSGKHYGQFTCEGVKRNVRVDTHALMRHRFVSLVSLSIRIGCKSFFKRSVRRNLSYSCRGNRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPSQQSHPGATGQFTLTNGDSVSCSSINGHSYLSSYISLLLRAEPYPNSRYSQCMQPNNILGIDNICELAARLLFSAVEWAKNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVSHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYISSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00604872;
- 90% Identity
- iTF_01037033;
- 80% Identity
- iTF_01037033;