Pgra004571.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- svp
- Assembly
- GCA_002006095.1
- Location
- NW:158492-279647[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.043 1.2e+02 1.2 0.6 135 162 26 53 5 66 0.78 2 2 2.2e-44 6e-41 140.5 0.1 211 404 203 393 186 398 0.93
Sequence Information
- Coding Sequence
- atgCCACCCGCGCATCTTACACCTTCGGCCACGCCGGAAGACATCACCTGCTTGGTACCCACCGGCTCAGTACTGACTTCGAGGGATCCTCTGCCACCCAGCACTACCCCAGGCAGCCAGGCCAACAGCTCTCAGTCTGGCAGCTCGCAAACAGACAAGTCGCCGAATATTGAGTGCGTTGTCTGCGGAGACAAGAGCAGCGGCAAACATTATGGACAATTTACTTGCGAGGgttgCAAGAGTTTCTTCAAGAGGAGCGTCAGGCGGAATCTGACGTACTCGTGTCGGGGGAGCAGAAACTGTCCCATTGACCAACACCATAGAAACCAGTGCCAATTTTGCCGCTTGAAAAAGTGCCTGAAGATGGGCATGCGCCGGGAAGGTATGAAGTCCGTGCAGAGAGGGCGAGTGCCGCCGTCGCAACCTTCCGGTTTGCCGGGTCTGCCGGGCCAGTTCGCCCTGACGAACGGGGACGCGGTCGCGTGCGCCAGCCTAAACGGACACCATTCTTACCTCTCGTCGTACATAAGCCTGCTGCTGAGGGCGGAGCCGTATCCGACCTCGAGATACGGCCAGTGCATGCAGCCCAATAATATCATGGGTATCGACAATATTTGCGAGCTCGCGGCCCGATTGCTCTTCTCGGCGGTCGAGTGGGCCCGAAATATTCCGTTTTTTCCAGAGCTTCAGGTCACGGACCAAGTGGCCCTGCTCAGGCTAGTGTGGAGCGAGCTGTTCGTCCTGAACGCGAGCCAGTGCTCGATGCCGCTCCACGTGGCGCCGCTCCTGGCGGCGGCGGGTCTTCACGCGTCGCCGATGGCGGCGGACCGCGTAGTCGCCTTCATGGATCACATCAGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCGCTGCACGTCGATTCTGCGGAGTACAGCTGCCTCAAGGCTATCGTCCTTTTCACCACTGACGCCTGTGGTCTCTCGGACGTAGCGCACATCGAATCCCTCCAGGAGAAGTCGCAGTGCGCGTTGGAAGAGTATTGCCGGTCGCAGTACCCGAACCAACCGACGAGGTTCGGCAAGCTGCTGCTGCGATTGCCGTCCCTGCGGACGGTCTCGTCGCAAGTGATCGAGCAGCTCTTCTTCGTGCGGCTGGTAGGCAAGACGCCGATCGAGACGCTTATCAGAGACATGCTGCTGAGTGGCAACAGCTTCAACTGGCCCTATCACATATCCACAATGTGA
- Protein Sequence
- MPPAHLTPSATPEDITCLVPTGSVLTSRDPLPPSTTPGSQANSSQSGSSQTDKSPNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQFCRLKKCLKMGMRREGMKSVQRGRVPPSQPSGLPGLPGQFALTNGDAVACASLNGHHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFNWPYHISTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00604872;
- 90% Identity
- iTF_01270589; iTF_01270526; iTF_00728681; iTF_00728713; iTF_00132001; iTF_00132033; iTF_01003553; iTF_01477603; iTF_00417668; iTF_00200774; iTF_01003563; iTF_01003595; iTF_00417583; iTF_00200784; iTF_00317491; iTF_01477685; iTF_00131990; iTF_01477590; iTF_00317528; iTF_00417594; iTF_00200859; iTF_00317501; iTF_01355329; iTF_00014756; iTF_00014788; iTF_01523397; iTF_00016071; iTF_01520263; iTF_01261864; iTF_00181323; iTF_01355341; iTF_01355503; iTF_00014744; iTF_00181336; iTF_01520344; iTF_01523385; iTF_00181370; iTF_01520251; iTF_00016061; iTF_00016093; iTF_01523453; iTF_01261856; iTF_01261888; iTF_00265031; iTF_00730085; iTF_00730096; iTF_00730135; iTF_00265082; iTF_00265019; iTF_01228397; iTF_01228437; iTF_01228408; iTF_01379252; iTF_00132641; iTF_00132675; iTF_00132653; iTF_00232641; iTF_00232008; iTF_00232040; iTF_00214448; iTF_00754673; iTF_00214418; iTF_00232658; iTF_00232020; iTF_00232630; iTF_00754839; iTF_00754683; iTF_00214429; iTF_00452612; iTF_01087236; iTF_00769654; iTF_00452601; iTF_01087290; iTF_01087227; iTF_00452639; iTF_01048260; iTF_01048297; iTF_01048250; iTF_00898853; iTF_00898767; iTF_00898778; iTF_01233062; iTF_01233031; iTF_01234376; iTF_01233022; iTF_01232449; iTF_01232424; iTF_01232434; iTF_00966055; iTF_00016705; iTF_00684193; iTF_00015394; iTF_00016740; iTF_00360965; iTF_00175814; iTF_00360934; iTF_00226633; iTF_00175787; iTF_00684203; iTF_00015405; iTF_00016717; iTF_01066285; iTF_01066318; iTF_00219823; iTF_00225263; iTF_00231375; iTF_00966063; iTF_00219856; iTF_00360944; iTF_00625520; iTF_00225297; iTF_00231345; iTF_00015442; iTF_01066296; iTF_00225273; iTF_00625561; iTF_00219834; iTF_00625531; iTF_00684219; iTF_00938046; iTF_00966078; iTF_00226623; iTF_00226655; iTF_00175776; iTF_01539640; iTF_00762585; iTF_00225949; iTF_01066976; iTF_01122471; iTF_01122508; iTF_01122459; iTF_00828808; iTF_00828845; iTF_00828818; iTF_00233257; iTF_00233289; iTF_00217131; iTF_00879660; iTF_00217101; iTF_00879671; iTF_00879804; iTF_00756681; iTF_00756730; iTF_00756670; iTF_01099213; iTF_01099304; iTF_01123087; iTF_01123121; iTF_01123100; iTF_00996371; iTF_00996421; iTF_00938090; iTF_01120275; iTF_01120229;
- 80% Identity
- iTF_01270589; iTF_01270526;