Basic Information

Insect: Drosophila sordidula
Gene Symbol: -
Assembly: GCA_035047465.1
Location: JAWNPQ010000029.1:5074228-5078711[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.2e-06 0.00033 20.8 0.3 1 23 224 247 224 247 0.92

2 17 0.00079 0.051 14.0 2.2 1 23 254 276 254 276 0.97

3 17 0.17 11 6.6 0.2 2 23 308 329 307 329 0.95

4 17 0.00081 0.053 13.9 2.2 1 23 419 442 419 442 0.97

5 17 0.018 1.2 9.7 0.6 1 19 449 467 449 469 0.96

6 17 0.0073 0.47 10.9 4.0 1 23 479 501 479 501 0.95

7 17 2.2e-06 0.00014 22.0 0.8 1 23 508 531 508 531 0.97

8 17 9.2e-05 0.0059 16.9 1.2 2 23 539 560 538 560 0.96

9 17 0.005 0.32 11.5 0.1 2 21 587 606 586 607 0.94

10 17 0.0043 0.27 11.7 2.0 1 23 659 682 659 682 0.96

11 17 0.023 1.5 9.3 0.2 2 23 720 742 719 742 0.94

12 17 0.00037 0.024 15.0 1.0 2 23 784 806 783 806 0.95

13 17 0.00087 0.056 13.8 0.3 1 23 820 842 820 842 0.95

14 17 0.00014 0.0088 16.4 1.6 1 23 848 870 848 870 0.99

15 17 3.6e-07 2.3e-05 24.5 2.6 1 23 876 898 876 898 0.98

16 17 1.2e-05 0.00076 19.7 3.8 1 23 904 926 904 926 0.97

17 17 0.0022 0.14 12.6 0.2 1 23 932 956 932 956 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.2e-06	0.00033	20.8	0.3	1	23	224	247	224	247	0.92
2	17	0.00079	0.051	14.0	2.2	1	23	254	276	254	276	0.97
3	17	0.17	11	6.6	0.2	2	23	308	329	307	329	0.95
4	17	0.00081	0.053	13.9	2.2	1	23	419	442	419	442	0.97
5	17	0.018	1.2	9.7	0.6	1	19	449	467	449	469	0.96
6	17	0.0073	0.47	10.9	4.0	1	23	479	501	479	501	0.95
7	17	2.2e-06	0.00014	22.0	0.8	1	23	508	531	508	531	0.97
8	17	9.2e-05	0.0059	16.9	1.2	2	23	539	560	538	560	0.96
9	17	0.005	0.32	11.5	0.1	2	21	587	606	586	607	0.94
10	17	0.0043	0.27	11.7	2.0	1	23	659	682	659	682	0.96
11	17	0.023	1.5	9.3	0.2	2	23	720	742	719	742	0.94
12	17	0.00037	0.024	15.0	1.0	2	23	784	806	783	806	0.95
13	17	0.00087	0.056	13.8	0.3	1	23	820	842	820	842	0.95
14	17	0.00014	0.0088	16.4	1.6	1	23	848	870	848	870	0.99
15	17	3.6e-07	2.3e-05	24.5	2.6	1	23	876	898	876	898	0.98
16	17	1.2e-05	0.00076	19.7	3.8	1	23	904	926	904	926	0.97
17	17	0.0022	0.14	12.6	0.2	1	23	932	956	932	956	0.90

Sequence Information

Coding Sequence: ATGAAGCTGCCTGTCATGTGTCGCACCTGCGATGCCAGGGATACGGATAAACTGTATAAGCtggcaacatcaacaaaaagATTTCCGGATAAACAGCTCTCAGATATTTTAGCTGAATTAACGCACATTGATTTGGATGCCAGCCTGGCGCCACAGCTGCCGCAGTGCCTGTGCGGCAACTGTGCCAGAAAATTAATTGGCGCCTATTATTATGTGAAGCAGGCGATGGTCGCCAACGAGCTTCTGATGAATCATGTGGACCGCCTGGAGAGCGACAAATCAACGGTCAATGACTGCCTGCAGGAGGCGCCCATGGAGCTGTGTGCCGAGCAGCATGTGGAGATCAAAATGGAaacggaggaggaggagatcGAAAATGATATAACCTGCACGGAACTGCCTGAGTTTACAACAATACAAAACGCTAATGATGTCGACCTGGATGCTGCCGATGAGCTGGATAACAAAAAGTCCGGTGATCCGCTGACGATGCTCGAACCCGTTAAACAGGAGGAGGGAGCGGCCGCCGCGGCCAGAGCAACAACTGAGCAGCTACGGGAATATAAGGCTGATATTGATGACGAAGACTCCCTCGATGATTTGCCTTTGCAGCAGCGCGTGCGCAAGTGGAAACAATCGGACAAGTTGCGCGCCGTTAAGCGTTCAATTTTCAAGTGCGCGGAGTGCCCGAAGAGCTTCAAGCGACCGGAGTATCTGAAGCAGCATGCGGGTCGTGCGCACAAATCGAAAAGCGATTGGTTCGCCTGCTCCTATTGCATACGCAAGTTCAGTCATCGCGAAGCGCTGCAGACGCATCTCAAGGTGCATCGCGACTCGAAGCGGTCCGCGAACCTGGGCGAGAGCAAAAAGGCCAAGGATATCGATGTGAATGTGTGCAAGCCGCATGGCTATAAGCTCATCGAGTGCATGATCTGTCAGAGTCAGTACGACAAGATTGCGGACCTGCGACGTCATTTGCAGCAGCATCCGGACATTGTTGGCTTTGGGGCGCGCTCAAATATGCAGCCACATGAGCTGGCCGAACTGTTCTATCCCGATGCCAAAGACGTTACGGTGGACCAGCTGAAGGCGCTCATCCGCAAAGATTTGGCGGCGGGCATTTACCAGCGATTCTATTCGATCACCAATCAGTCCGGCTATGAGATGGACCTGGACAGCTCGGAGACGGAAAGCGAAGCCGAATTGGACGCCGATGAGCAGTGCAAACAGCAGCGCAGCGCACCCAAAGCCAAATACAACTGTGAGCTGTGCCAAGAACGCTATCAACGTAAATACCAGCTCTTCGATCATCAGCGTCTCACGCACGCCTGGCTGGAGGCGCCGTATGTCTGCGGACGCTGCGATGCGCGCTTTGTCAGCCTCCACCTGCTGCGGCATCACAACGAGCTGCAGTGCAAAAATGCCCAAAAACGTTTCCTGTGCCACAGATGCCCCCTACGCTTCCGCTGGCGGCACAATCTGAAGGCGCACATACGGGAGCATCGCATAACCAATCAAACCTACGAGTGCAACGATTGCAAGCGCGTCTTTGACAAGAAGAAATCCCTGACGGTGCACATGCTCAGCGTGCATGCGGAGGAGTCGAAGCTCATACCGTGCCAATGGTGTACCCGCAAGTTCTATCGTCGCGACTATTTGGTTAAGCATCTGAAGCGTCACGGCATACGGGAGCAGGATATACCGCTGGCCGAGACGCTGATTGCGGCCACCTCGAAGCCGAACGGCGCCAAGCGCATCACCTGTAAAGTTTGCAACCTGCATTTCGAGCGCATCGTCGATCTGCGTGCGCACATTCAGCTGGAACTGAAGCTGGCGCTGTCGCTGCACCAGAACTACGATTCGCCGCACAACTACTCCATCACCAACGAATCGGGCtacgagctgcagctggccgacTCCGAGACGGAGGACGAAGCCCACATGTCGAGGGCCTCGCCCAGCACGCGCTTCGTCTACGTCTGCGAGCTGTGCAAAGTTCAGTGCAAGCGCAAATACGAGATGATTCAGCATCAACGTGCCATGCACCGCTTCGACAAGATGCCACACGAGTGCGAGCTGTGCATATTCAAGTGTGTCTGCAAGAGCATCATGGAACAGCACCGGCAATCGCAGTGCCACAGCGCCGAGAAGAAACTGGTGTGCGGCAAGTGCAGTTACAAGTTCATGTGGCCCGAGAATCTGCAGCAGCATATGCTGCTGCAacacggcggcggcgacggcagcaCAGAGACTGCCCAGCCGGAAGCTAGTGAAGCAAGTAGTGCTGATCGCATGCCCAGTGTCAATGCCGTGCCGGCTGCTCCGGCGGAGGCAGATGTGCAGTTGCTGCAGTGTCCGCACTGCGACCGCACATATCAGATGAAGGCGCGCCTCAACAATCACATACGGGACGTGCACATCAATGGCGATCGCAAGCGCAAGGAGGCCATCAAGAAGTTCCTATGCTCGCTATGCGGTCGCGAAACCCAGTCGGCGGCCACGCTGGTCACCCACATGCGCCGCCACACCGGCGAGAAGCCGTTCAAGTGCGATCTCTGCGAAATGGCTTTCCCCAGGCACTCGGAAATGATGTCGCATCGGAGGATGCACACGGGCGAGAAGCCCTTCCATTGCACCGTTTGTGGCAAGGACTTTGCGCGCTCCGACAAGCTGAAGCGGCACATGCTGACGCACAGCGGCCTGAAGCCGCACAAGTGCACGTACTGTGACAAGAGCTATCGGCAGGCCAAGGATCTGAAGCTgcacctgcagcagcacacGGGCGAGTGTCCGTTCATATGCGGCACGTGCGGCGAACGCTTCATACAGGGCACAGCGCTGGAGAAGCATCGCATGATGCGTCGCCACTTTGACGAGGTCGAGGAGCGCACCACGAACACATTAACTGCATAA
Protein Sequence: MKLPVMCRTCDARDTDKLYKLATSTKRFPDKQLSDILAELTHIDLDASLAPQLPQCLCGNCARKLIGAYYYVKQAMVANELLMNHVDRLESDKSTVNDCLQEAPMELCAEQHVEIKMETEEEEIENDITCTELPEFTTIQNANDVDLDAADELDNKKSGDPLTMLEPVKQEEGAAAAARATTEQLREYKADIDDEDSLDDLPLQQRVRKWKQSDKLRAVKRSIFKCAECPKSFKRPEYLKQHAGRAHKSKSDWFACSYCIRKFSHREALQTHLKVHRDSKRSANLGESKKAKDIDVNVCKPHGYKLIECMICQSQYDKIADLRRHLQQHPDIVGFGARSNMQPHELAELFYPDAKDVTVDQLKALIRKDLAAGIYQRFYSITNQSGYEMDLDSSETESEAELDADEQCKQQRSAPKAKYNCELCQERYQRKYQLFDHQRLTHAWLEAPYVCGRCDARFVSLHLLRHHNELQCKNAQKRFLCHRCPLRFRWRHNLKAHIREHRITNQTYECNDCKRVFDKKKSLTVHMLSVHAEESKLIPCQWCTRKFYRRDYLVKHLKRHGIREQDIPLAETLIAATSKPNGAKRITCKVCNLHFERIVDLRAHIQLELKLALSLHQNYDSPHNYSITNESGYELQLADSETEDEAHMSRASPSTRFVYVCELCKVQCKRKYEMIQHQRAMHRFDKMPHECELCIFKCVCKSIMEQHRQSQCHSAEKKLVCGKCSYKFMWPENLQQHMLLQHGGGDGSTETAQPEASEASSADRMPSVNAVPAAPAEADVQLLQCPHCDRTYQMKARLNNHIRDVHINGDRKRKEAIKKFLCSLCGRETQSAATLVTHMRRHTGEKPFKCDLCEMAFPRHSEMMSHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCDKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQGTALEKHRMMRRHFDEVEERTTNTLTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00519319;
90% Identity: iTF_00588973; iTF_00561168; iTF_00495991; iTF_00541886; iTF_00567666; iTF_00547487;
80% Identity: -