Dsor010729.1
Basic Information
- Insect
- Drosophila sordidapex
- Gene Symbol
- MBD2
- Assembly
- GCA_035043295.1
- Location
- JAWNNA010000913.1:2345853-2347625[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-22 2.8e-19 68.6 0.1 1 74 9 77 9 80 0.93 2 2 4e-05 0.083 12.6 0.1 27 76 188 246 173 247 0.89
Sequence Information
- Coding Sequence
- ATGCAAATGAATCCGAGTATTACAATCGAGAGAAAACGCGTTGATTGCAACGCATTACCAAAGGGCTGGCAACGTGAGGAAGTACACAGAAAATCGAGCTGTAATTCGGGCGTTGATGTTTTCTACTACAGCCCGACAGGCAAAAGAATTGAAAGCAAACCGCAATTAGCACGCCAATTGAGCGCCGAGATGTTTGACATAAGCAACTTTGATTTTCAAACCGGCAAAATGCAGTTGCAACGGCAAATGCCCTCCCCATCGATATCGCTATATCGCTGCAATGCAGCAGGCGCCATTATTAGCAATGCCAGCCTGGGTAGCAACGCCGCCAATGCACTCAAACGCAAATATAGTCGACCTCAGGTTCAAGGCTCTAACAttaacatcagcaacatcagcagcaacaacaacaatcacagcaGCATCGGCATTGCAGCATCGTTAACAGGAACTGGAATAtcgccatcagcagcagcagcaaccacaacgacaacaactgcagcggcagcagctaatctgcgccaacaacaacagcagcaacaacaacaatttgaattcagCCGCGCTTTGCGCACAGATGTTTCACTGGTGCCGCCCATACGACAGACAGCCTCCATCTTCAAGCAGCCGGTGACTGTGGTGCGCAATCACGAGCCCAGCAAGGTGAAGCACGATGCCAAGCACGGTGGCCAGGAGAAGCCCAAGCAGCTGTTCTGGGAGAAGCGATTGGAACGCTTGCGTGCCTGCCATGACAACGGCGAGGAGCTGGACGAGATATCACTGCCAAAGACCATACGCACCGTCGGTCCCAATGTCAACGAACAGACGGTTCTGCAATCTGTGGCTACGGCCCTCCATATGCTCAATGCCGGTGTGCACGGCCAGAGTTCGACCAAGGCTGAGCTCACAAAGAATGCGATGGCATTTATGAATCCCGAACAGCCGCTGATGCATGCGGTTATCATCTCAGAGGACGACATTCGCAAGCAGGAGGATCGCGTAGGCGTGGCACGGCGAAAACTACAGGATGCGCTCAAGACATGA
- Protein Sequence
- MQMNPSITIERKRVDCNALPKGWQREEVHRKSSCNSGVDVFYYSPTGKRIESKPQLARQLSAEMFDISNFDFQTGKMQLQRQMPSPSISLYRCNAAGAIISNASLGSNAANALKRKYSRPQVQGSNINISNISSNNNNHSSIGIAASLTGTGISPSAAAATTTTTTAAAAANLRQQQQQQQQQFEFSRALRTDVSLVPPIRQTASIFKQPVTVVRNHEPSKVKHDAKHGGQEKPKQLFWEKRLERLRACHDNGEELDEISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00593092;
- 90% Identity
- iTF_00552296; iTF_01327883; iTF_01321185; iTF_01320461; iTF_01326387; iTF_01325655; iTF_00564642; iTF_00501796; iTF_00511268; iTF_00500301; iTF_00560262; iTF_00528039; iTF_00516981; iTF_00496590; iTF_00482224; iTF_00609875; iTF_00593092; iTF_00570386; iTF_00576338; iTF_00499577; iTF_00518432; iTF_00595936; iTF_00535303; iTF_00498865; iTF_00543735; iTF_00619831; iTF_00616188; iTF_00513450; iTF_00577053; iTF_00495104; iTF_00607057; iTF_00485851; iTF_00582950; iTF_00548795; iTF_00522163; iTF_00558653; iTF_00574040; iTF_00525119; iTF_00542431; iTF_00566783; iTF_00497377; iTF_00498144; iTF_00557203; iTF_00521344;
- 80% Identity
- -