Dnig010320.1
Basic Information
- Insect
- Drosophila nigromelanica
- Gene Symbol
- -
- Assembly
- GCA_004149445.1
- Location
- SCDR01000305.1:2-8635[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-12 1.6e-08 34.7 0.0 1 40 431 471 431 474 0.90 2 3 2.6e-14 8.8e-11 41.9 0.1 2 39 486 523 485 526 0.94 3 3 6.1e-18 2e-14 53.5 0.0 1 45 540 585 540 585 0.98
Sequence Information
- Coding Sequence
- ATGGAGATTTTTGCCTCGCCCCATGTCACCTCCACCCCCATCTGCCGCCTGTTTCTCCTGCATTTGTCAGAGCTTAACCCCACCGCACGCTTTGATTTGACTTTGGGTTTGCTGCGCACCGCGGAACAGTTGAAAATCAAAGGCCTCTGCGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCTGCATCGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGGCCAAAATCAGACATCGATCGTGAGTCTGCAGCAAACGGCCGACGGCAATTATATACCCGTTAGCACACCGGGCGACGACTCCGATAGCGATAACAAGCCGCAAAAGATCTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTCCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACATGTCGATCTATCGTGCAATCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATACCGCATCATCATGCAACTGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATTGAGGCCAAGCACTTGGCTcacgtgcagcagcaacagcagcagcagcaacagcagcaacaacagcagcagcagcaacagcaacaacagcaacagcagcaacatgcacatcatcatcagcatatGCACGCTCAGCAATTGTTGGCACagagtcagcaacagcagcagcagcagcaacagcaacaccaacagcagcagcagcaacaacaggcggCGGTGCATGCAGCACAGCATGCAGCGCATGCCACGCATACCGAAATCGGTGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACAGCGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCTTGGAACGAGGATGCTCTGCAGAACGCATTGGAGGCATTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCGAAAGCGTTCGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGCGAGGGTATCCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCGATTCGCGCCGGCAACACGTCCGTGCAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGTATCGAACTGTCGCGTT
- Protein Sequence
- MEIFASPHVTSTPICRLFLLHLSELNPTARFDLTLGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIGQNQTSIVSLQQTADGNYIPVSTPGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIPHHHATGDESNSNLVQHIKSEVIEAKHLAHVQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHQHMHAQQLLAQSQQQQQQQQQQHQQQQQQQQAAVHAAQHAAHATHTEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTAHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00534499; iTF_00475137; iTF_01558952; iTF_00552953;
- 90% Identity
- -
- 80% Identity
- -