Basic Information

Insect: Drosophila americana
Gene Symbol: -
Assembly: GCA_018152915.1
Location: JAECXQ010000416.1:6458718-6466397[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.7e-12 8.5e-09 34.7 0.0 1 40 301 341 301 344 0.90

2 4 2.6e-14 4.7e-11 41.9 0.1 2 39 356 393 355 396 0.94

3 4 6e-18 1.1e-14 53.6 0.0 1 45 410 455 410 455 0.98

4 4 6.1e-20 1.1e-16 59.9 0.0 1 43 462 505 462 506 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.7e-12	8.5e-09	34.7	0.0	1	40	301	341	301	344	0.90
2	4	2.6e-14	4.7e-11	41.9	0.1	2	39	356	393	355	396	0.94
3	4	6e-18	1.1e-14	53.6	0.0	1	45	410	455	410	455	0.98
4	4	6.1e-20	1.1e-16	59.9	0.0	1	43	462	505	462	506	0.97

Sequence Information

Coding Sequence: ATGCGCTTGGGGTTGAGTGCGGCTCTGAGGCTGGGTTTGCTGCGCACCGCAGAACAATTGAAAATCAAAGGCCTCTGCGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCATCGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGGAACATTGTGAACGCGAGCCTACAAACGGCAGACGGCAATTATATACCGGTGGCAACAGCTGGCGACGACTCCGATAGCGATAACAAGCCGCAAAAGATCTGCAAAACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCACATCCATCGGCTCGATCAATCTCCCATGCACTCAATATCGCATCACCATGCAACCGGGGACGAGAGCAACTCGAATCTGGCGCAGCATATCAAAAGTGAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGTACCAAATCGTGGAACGAGGATGCCTTACAGAATGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCCAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTCGGTCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGCTTCAAGCGTGGCAAATACGATGTCGTGGCCAATACCAGTGGCATCTCCCTCAACAATACATCGGGCAACACGACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCCATATCGGGCCTGGCCAGCGGATCGTCGACTGCGCCGCCATCGTCGAGCACAGCTGGCACCAGCAAGCGCAAGAAAGCGACTAAGCAAAAGCGTTGA
Protein Sequence: MRLGLSAALRLGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIVNASLQTADGNYIPVATAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHIHRLDQSPMHSISHHHATGDESNSNLAQHIKSEIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPISGLASGSSTAPPSSSTAGTSKRKKATKQKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560957;
90% Identity: iTF_00530185; iTF_00547278; iTF_00514097;
80% Identity: -