Dlit013102.1
Basic Information
- Insect
- Drosophila littoralis
- Gene Symbol
- -
- Assembly
- GCA_018903485.1
- Location
- JAEIGF010000383.1:3906501-3912246[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5e-12 1.1e-08 34.4 0.0 1 40 405 445 405 448 0.90 2 4 2.8e-14 6.1e-11 41.6 0.1 2 39 460 497 459 500 0.94 3 4 6.4e-18 1.4e-14 53.3 0.0 1 45 514 559 514 559 0.98 4 4 6.6e-20 1.4e-16 59.7 0.0 1 43 566 609 566 610 0.97
Sequence Information
- Coding Sequence
- ATGTATTTTTTTTATTGGTTATTGCAGGGTCTGCTGCGCACCGCAGAACAATTGAAAATCAAAGGCCTCTGCGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCATCGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGGAACATTGGACAAAATCAAACATCGATCGTGAGTCTACAGCAAACGGCAGACGGCAATTATATACCGGTGGCAACAGCTGGCGACGACTCCGATAGCGATAACAAGCCGCAAAAGATCTGCAAGACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACGTCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCACATCCATCGGCTCGATCAATCTCCCATGCACTCAATATCGCATCACCATGCAACCGGGGACGAGAGCAACTCGAATCTGGCGCAGCATATCAAAAGTGAGGTGATTGAGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGCCACGCATGCGGAAATCGGTGGCGCCACCGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCTTACAGAATGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCCAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCTGTACAAAAAGCAAGTGCCGAATTTGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTCGGTCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGCTTCAAGCGTGGCAAATACGATGTCGTGGCCAATACCAGTGGCATCTCCCTCAACAATACATCGGGCAACACGACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCCATATCGGGCCTGGCCAGCGGATCGTCGACTGCGCCGCCATCGTCGAGCACAGCTGGCACCAGCAAGCGCAAGAAAGCGACTAAGCAAAAGCGTTGA
- Protein Sequence
- MYFFYWLLQGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIGQNQTSIVSLQQTADGNYIPVATAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHIHRLDQSPMHSISHHHATGDESNSNLAQHIKSEVIEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATHAEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPISGLASGSSTAPPSSSTAGTSKRKKATKQKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560957;
- 90% Identity
- -
- 80% Identity
- -