Dneo016495.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- -
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000002.1:14745263-14751064[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0098 0.8 10.4 0.3 1 23 1312 1335 1312 1335 0.95 2 13 7 5.7e+02 1.4 0.2 1 23 1494 1516 1494 1516 0.91 3 13 0.00016 0.013 16.0 2.7 2 23 1519 1540 1519 1540 0.97 4 13 0.0001 0.0082 16.6 0.9 3 23 1548 1568 1546 1568 0.98 5 13 5e-07 4.1e-05 23.9 4.1 2 23 1575 1596 1574 1596 0.97 6 13 4.7 3.9e+02 1.9 0.4 5 23 1609 1627 1607 1627 0.96 7 13 1.2 96 3.8 5.4 3 23 1634 1655 1632 1655 0.93 8 13 0.13 10 6.9 0.2 2 23 1666 1686 1665 1686 0.96 9 13 4.8e-05 0.0039 17.7 0.4 1 19 1692 1710 1692 1714 0.95 10 13 3e-05 0.0025 18.3 0.4 1 23 1722 1744 1722 1744 0.98 11 13 9e-05 0.0073 16.8 7.6 1 23 1750 1772 1750 1773 0.96 12 13 0.00017 0.014 15.9 5.9 1 23 1778 1800 1778 1800 0.98 13 13 0.025 2 9.1 8.2 1 23 1806 1828 1806 1829 0.95
Sequence Information
- Coding Sequence
- ATGGTCGACAGTGTGCAGTGCCCCGTGTGCACTTTGTATTTGCATGCGGGCATGAATCTATCCGATCATCTGGAGACACATCCCAAGGAGCAGGTTATCAAGGCATTGGTGCAAATGACAATTGTTGGTAATAACAACAATGGCATGGGCAGTGCTCTGGCGGCGGCCATGCTGGCCACATCTGCTACAGATAATGCAACCTCACCATCCGCAACGGCTACCACATCCGCATCATCATCATCATCCACGATTGTTGATGTAAAACCATCGATAAAAACATTGACAACTGGAAAGGGATTGTCATCTCAGCCAGCGGTGGCGTCACCTCCACCGTTATCATCCTCAATTGCTGGCTCCACAAACAAACAATTGAATAATCCACCGATTAAGGCAACACTGAAAAGCGCTCCGCCCATGCCCATAACCACTTTGACTGAGGCATCAGCCGCCAAACCATCTGCACCCACCACCACTACCACAATATATCAGCCAACGTTGGCCACTTCAGATTATGGCTATGAGCAGCAGGCGACTGCTCCTCCTCCCTCACAGCAACAGCAGCAGCAGCATGGTTTTTCTCGTGGAGCCACTGCCACATTGGTTATACCACAAGTACCGCAGCAGCATTTCCTTGCCAACCAGCAGCAGCAACAACAACAACAGGCATTGTTTGCCCATCAGCAGGCGCAACCTGGGCTAAAATTTACCTATGGAAATACCTCGCTGCCACCGCCACCGCCATTGCAGATCTTCACGCAGCAACAGCAGGCGGCAACGCAGCAAACACAATCACATCAGAAGCCCCCACCCGCCTATGGAGCCGCCATCAGTCAAATTCGATCTCAGCATAACCAAAATAAGCAGCAGCACCACCAACACCAGCACCACCTAAATTTGCACCACAATATAAACCTGGCACCACCGACCAATGGAACTGGCAAACAGCAGCAGCAGCAGGCTACTAATAAAGTTCTAACAGAAGTATTTCTAAATCCCCCACCACCACCGCCGCCGCCGCCAACAACAACAACAACACTGCCCGTTGCGCAACCACATCATCTACATCATCATCATCAACAGCAGCAGCAATCCGTAATGCCAAGACTGCCAACTCAGTCAACAATGACACTGCAAACTCTAACAACGAGTTGTACTTCTTCCACCACCTCATCAGGATCATCATCGGTTCGTGTGAGTCGGCAAACAAATTCACCATTTGGAGCACTGCTCAATGCAGCAGCTGCAGTTGCCTGCGCCTCATCAACATCTTCGTCCTCATCCGTATTGCGCTATGCCGAATCACCAGTAGCCCATTATCTGGAGCGGGAAAATGGCGATTTTATTGTTCAAGAGACGCCCAAGCATATTGTAGAGTGTGTGGAGAAGGAAGATGGTGAATTTTCAGTGATTGAACGTATATATCAATCGCCACCAAGTGTCCTTCATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAGAGGAGAATAGTCGTAGTCGAAATCCAAGTAAAACAACGAAAAAGACTCGTAAATCAAAACCGAAAAGAGCACCCAAGCAGCAGGCGCAGCACCAGCAGCGAATATGTGATGAGGAGGAGTTCATGAGCTTAAGCAGCGGAGCAGAAAGCGAGCCGGAGAAGGAAAAGGAGAGACGTGAGCAAAAAATTAAGCAATTGGAGGCGACACAGCAACCGCCACTTTGCACAGCACCATCAACAAGCGGAGCAGCAGCGGCGACAGGTGCTGGATCAGCTTTAGTTACAGCCACAACAACAGCTGGTGGGTCAGCGGATGGCACTTCCAATACCACTTCCACAAAATCCAAAAAGAATCGTATTACAGTGCTTAGCGATGTGCCACTGAATATGAACGAATATCTTGATTTAATGGGTAACATTGTGGCCTCCAGTCGCATTGGCCAGGCACGTCCATTTGCCGCCGTTGCTCCCATACCATTGGTGAAAGTGGAAAAGGAAGAGCCACTGGATGAGGACTATGATAATGAAAGTGTAGCGGAAACAGTCTCATCCATACCTCCAGTAGAGCAGAAGCCTAGTTTAGGCACCACCAGCGTAATCCGTATGGCCAGCACTACCACAACTAGTAGTAACAGCAGCCTAACTAATGCTGAAGATCTCACACAGCCACCGCTTATGAAGATTGAGGTGGAGGCAACAGCATTATTAGCGCCACGTTTCTCGGCACCAACAGCGACTCCGCAGCGTGGTCCAAAGAAGTTGGTGATCAAACCCAAGGCTACGACGACGACGACGACAACGAAAAAGACTGACATCCCCATAACACCATCATCGTCATCCACCGCCAACTATTCTCCTTCTTCTACCAAACGAATCATATCAAATGGAAACACGGATGGGGCCATTCCTGCTACCGTTTTCACTGAGATAGTGCAAATCAAGAGCGAGACTCTGGAAGCTCCGTCAACGAGTAGCAATAGCATATTGGAAAAGCATCTGACCAAGAGAAAACACTCCACGGTCAATGATGATGATGCTCGTGTTCTGCTCGATTTTGCCAATTCCAAACAGTCGCCCACATTAACAGGTGGACCCACATCCAATACTACATTTGTTGTTAATGCCAATACCTCTGGTTTTCCTTCGGCGGGTTCTGTTTTTGCCGGCAATACGGGGGCAAATCCTAACCAGAATGTTGGTAAACCGGGGGAAGAATACATATTGCCCGATAATAATCTGGAGGTGGATGAAATTGTGATATCATCGTCGTCTTCCTATGCCGCCTCATCCGCTTCACAGATGCAGAGCCAAGTCCAGATGCAAGGCGCCGCTAATAATGCTCAGCCGGGCTCGGCTGCGGGGACATCATTTAATGACTTTAACTTCCTGTACCATCAGACAACGACAACACAGACAACAGGAGCAAATTCCACGGGTGGTGCCTATTTTACACCCTTTGGCAGGCAACAGCAGCTTCAGCAGGCGCATCATGGAGCCAGTGAGGCTACTAATGCAGCTACTTTGGCCTCCTCTTCAAGCAATTCCTCGGCATTGGATCATGATTCAATGAATGCTACTTTTCGTGTTACCAAAACACAATCCTCGCACTCTTGGTACCATCCGGTTCAGCAACAGGCATCGACGACAACTGGAGCGATGGCGGGCGGAGGAGGTGCCTCATCATCCTCCCACAATCACGACTTGGCGGCCCAACCAACCAATTTCAATGCCGCTTTGGCTGCCGTCGAATGCTGCAGCGTGGCTGTGGACGGTGATGCCAAGGCTTATTTGGATCTTGATGCCTGTAAACGCGAACAGTTGAGCAATAGCAGTAACTTACCATCGGTTTCTGCATCCACCACATCGTCATCGTTTGCCGGTGCTGGCACTGAGAGCAGTCTGGTTGGAGGTCTCAACATACGTACCGATGAGAAAATGCCCGCAAAGGGTGAAATATCCGAGCAAGAAAGCAATTGTGACATTGAAAACTCCTGGAGTCAGTCGATGTACGGTGACATATCACAGCGCTACTTTAGAAATCAATTCTCTGCTGGCTATAACACCGACTGGCGACAAGACTACTATCCAGCACAGGATCTCAGCGCCCAGCAGAGGGAGCACAAGCGCTTTGATTTTAATGCGGTCGATGAGGAGGTTTCCTCAATGTCCAGGAAAAGTTCACCCCTACCCACCGCTTCCACCTCATCGTCATCCTCGGCATTGTTGGCTGGTCCACCAATAGCCTCCACCTCCAGGGCGGCAGCTGAAGCAGCGGCCGAAGCAGCTGCAGCAGCAGCAGCAGCTGTTGCTGTATTGGCTCAGCGTAAACCGCCACCACGTCGCAAAATCTACAAGTGTCCTCATTGTGAAGCCATCTTTGAAAAACTTAAGGAGCGGAATGCGCACATGATTGGCGAACATAATTATGTGCGGCAGAATCGACGCTTGATTTGCACACAGCCTTTGGTCAGTTCATCGAGCATGTTGCCGCCTCAGCCGCAGCAGCAACAACAACAGCATCAACCAATGCTCCTCCAAGCTGGGCATGGATTAATACAAGAGGATTCAAAAGATGGCATCGTTAAGATCAAGCAGGAGCATTGTCAAGAGAAGCACGACGCCGAGCAGCAGCTACTGGATCATGCTGAACTGGCTGATATGAAGGATGCGGAATTGCTTGGCCATGTCGCTGTGACGGAGGGTGGTGATGTTAAGCCACCAGGTGTTGGTGGTGATCTAGATGAGAAGCCAGCCATACCGCCTCTGGCAATGACCACACCCGCCGCCAAATTGGCGGCTCTTTACCGAATGCTAATGGCCTACAACGAATCCAAACTTGGCCAAGAGCGCAACAGCATTAGCGAATTGGAACAAAAAGCAATGGAGAAATCCATATTTCTGTGCTATGTGTGTCGCACTGATTTCCCATCCGTCAAGCTGTACGATGCACATCTCACAGAGCATCCGGCCGAGTGCTTTACCTGTGGTAAGAAATTCTATCGATGGAAGAACTTTTCACTTCATCTGAAACGTCACTTGGGCTGGAAGGAGTTTGGCTGTTGTGTATGTGACAAAAAGTTTGTGGTGCGTAGTGCCCTAGTGGAGCATATGCGCATGCATACTGGTCAGACACCGCTCAAGTGTAAAATTTGTGGTAAAAAGTTTAAGCGATACTCCAATTTAACGCAGCATCGCAAGCGCCATACAAAAATGATGGTAAGAAAGAAGGAATATGTGTGCCACTGCGGTGAAGTATTGCCCTCAAAAGCCCGGTTTCTTTGGCACAAGGAGACGCACGATTTGAAGCCCAAATGTTGCCCCTACTGTTGCGATCGCTTCGTTCATGCCAATTCCCTTCGGCGTCATATCCGTTTGGCCCATTCGGATAAATTCGATTATGCCGAACCCATGGAATGCCCAATGTGTAAACAAATCTTTGCAAAGACTTCCATTAAGGCACACATGGCTACACATTCGACAGATCCGCAATACGATTGCGCCATCTGTAACAAGAGCTTCTCAACCAAATGGAATCTTAAAATTCACTCATGGGTGCATGCCAATCGCACTGCCAAGCCCTTCAAATGCGAGTACTGTCCCAAAGCATTTGTCCGTGAGCTGGACTTTAAGAATCACATTAATGCCCACAAACAGATTAAGCCGTATACGTGCGAGTATTGCGGATGCAAGTTTATACGCAAATACAATTATATGAGGCATCGGCGCGAACACCATGGCAACAAGATGTTCACCTGTGATCAGTGCGATAAATCCTTCCATCGGCACTATTATCTGATCGAGCATCGTCGAATTCATACTGGCGAGCGACCGTTTCATTGCACCATCTGCGGGAAAAGCTCCACAACAAAAACCAATCACAACAAGCATCTGAAGATCCATCACTCTCGAGATCCCTTCACTGTGGAAGTTTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNNNNGMGSALAAAMLATSATDNATSPSATATTSASSSSSTIVDVKPSIKTLTTGKGLSSQPAVASPPPLSSSIAGSTNKQLNNPPIKATLKSAPPMPITTLTEASAAKPSAPTTTTTIYQPTLATSDYGYEQQATAPPPSQQQQQQHGFSRGATATLVIPQVPQQHFLANQQQQQQQQALFAHQQAQPGLKFTYGNTSLPPPPPLQIFTQQQQAATQQTQSHQKPPPAYGAAISQIRSQHNQNKQQHHQHQHHLNLHHNINLAPPTNGTGKQQQQQATNKVLTEVFLNPPPPPPPPPTTTTTLPVAQPHHLHHHHQQQQQSVMPRLPTQSTMTLQTLTTSCTSSTTSSGSSSVRVSRQTNSPFGALLNAAAAVACASSTSSSSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREENSRSRNPSKTTKKTRKSKPKRAPKQQAQHQQRICDEEEFMSLSSGAESEPEKEKERREQKIKQLEATQQPPLCTAPSTSGAAAATGAGSALVTATTTAGGSADGTSNTTSTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGQARPFAAVAPIPLVKVEKEEPLDEDYDNESVAETVSSIPPVEQKPSLGTTSVIRMASTTTTSSNSSLTNAEDLTQPPLMKIEVEATALLAPRFSAPTATPQRGPKKLVIKPKATTTTTTTKKTDIPITPSSSSTANYSPSSTKRIISNGNTDGAIPATVFTEIVQIKSETLEAPSTSSNSILEKHLTKRKHSTVNDDDARVLLDFANSKQSPTLTGGPTSNTTFVVNANTSGFPSAGSVFAGNTGANPNQNVGKPGEEYILPDNNLEVDEIVISSSSSYAASSASQMQSQVQMQGAANNAQPGSAAGTSFNDFNFLYHQTTTTQTTGANSTGGAYFTPFGRQQQLQQAHHGASEATNAATLASSSSNSSALDHDSMNATFRVTKTQSSHSWYHPVQQQASTTTGAMAGGGGASSSSHNHDLAAQPTNFNAALAAVECCSVAVDGDAKAYLDLDACKREQLSNSSNLPSVSASTTSSSFAGAGTESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFSAGYNTDWRQDYYPAQDLSAQQREHKRFDFNAVDEEVSSMSRKSSPLPTASTSSSSSALLAGPPIASTSRAAAEAAAEAAAAAAAAVAVLAQRKPPPRRKIYKCPHCEAIFEKLKERNAHMIGEHNYVRQNRRLICTQPLVSSSSMLPPQPQQQQQQHQPMLLQAGHGLIQEDSKDGIVKIKQEHCQEKHDAEQQLLDHAELADMKDAELLGHVAVTEGGDVKPPGVGGDLDEKPAIPPLAMTTPAAKLAALYRMLMAYNESKLGQERNSISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCCVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKMFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00591181; iTF_00483936; iTF_00578005; iTF_00600569; iTF_00501306;
- 90% Identity
- -
- 80% Identity
- -