Dema011362.1
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- -
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000221.1:11395537-11401342[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.98 10.4 0.3 1 23 1305 1328 1305 1328 0.95 2 13 8 7e+02 1.4 0.2 1 23 1486 1508 1486 1508 0.91 3 13 0.00018 0.016 16.0 2.7 2 23 1511 1532 1511 1532 0.97 4 13 0.00011 0.01 16.6 0.9 3 23 1540 1560 1538 1560 0.98 5 13 5.7e-07 5e-05 23.9 4.1 2 23 1567 1588 1566 1588 0.97 6 13 5.4 4.7e+02 1.9 0.4 5 23 1601 1619 1599 1619 0.96 7 13 1.3 1.2e+02 3.8 5.4 3 23 1626 1647 1624 1647 0.93 8 13 0.14 13 6.9 0.2 2 23 1658 1678 1657 1678 0.96 9 13 5.5e-05 0.0048 17.7 0.4 1 19 1684 1702 1684 1706 0.95 10 13 3.5e-05 0.003 18.3 0.4 1 23 1714 1736 1714 1736 0.98 11 13 0.0001 0.009 16.8 7.6 1 23 1742 1764 1742 1765 0.96 12 13 0.0002 0.017 15.9 5.9 1 23 1770 1792 1770 1792 0.98 13 13 0.028 2.5 9.1 8.2 1 23 1798 1820 1798 1821 0.95
Sequence Information
- Coding Sequence
- ATGGTCGACAGTGTGCAGTGCCCCGTGTGCACTTTGTATTTGCATGCGGGCATGAATCTATCCGATCATCTGGAGACACATCCCAAGGAGCAGGTTATTAAGGCATTGGTGCAAATGACAATTGTTGGTAACAACAGCAATGGCATGGGCAGTGCTCTGGCGGCGGCAATGCTTGCCACATCTGTTACAGATAATGCAACCTCACCATCCGCATCCGCAACCACAtccgcatcatcatcatctaacACGATTGTTGATGTAAAACCATCCATTAAAACATTGACAACTGGAAAAGTATTGTCATCTCAGCCAGCGGTGGCGTCACCGCCACCGTTATCTTCCTCTATTGCTGGTtccacaacaaacaaattgaacaatCCACCGATTAAGGCAACACTGAAAAGCGCTCCGCCCATGCCCATAACCACTTTGACTGAGGCATCAGCCACCAAACCATCTGcacccaccaccaccacaataTATCAGCCAACGTTGGCCACTTCAGATTTTGGCTATGACCAGCAGGGGACTGCTCCCCCTTCctcacagcagcaacagcagcatagTTATTCGCGTGGAGCCACTGCCACATTGGTTATACCACAAGTGCCGCAACAGCATTTCCTCGCcaatcagcagcagcaacaacaccaacaacaggcACTGTTTGCCCATCAGCAGACGCAACCTGGACTAAAATATACCTATGGAAATACCTCTctgccaccgccaccgccattGCAGATCTTtacgcagcaacagcaggcgTCAACGCAGCAAACACAATCACATCAGAAGCCCCCACCCGCCTATGGAGCCGCCATCAGTCAAATTCGATCTCAGCATAACCaaaacaagcagcagcagcaccaccaccaccatcaacaGCACCACCTAAATTTGCACCACAATATAAACCTGGCACCACCGACCAATGGAACTggcaaacagcagcagcagtctaCTAATAAAGTTCTAACAGAAGTATTTCTGAATcccccaccaccaccgccgccgccaacaacaacactgcCCGTTGCGCAACCACAGCATcatccacatcatcatcatcaacagcagcagcaatccGTTATGCCAAGACTACCAGCTCAGTCAACGATGACACTGCAATCCCTAACAACGAGTTGTACTTCTTCCACCGCATCATCAGGATCATCCTCGGTTCGAGTTAGTCGGCAAACAAATTCACCATTTGGAGCTTTGCTTaatgcagctgcagcagctgcctgcgcctcatcatcatcttcgtcCTCATCCGTATTGCGTTATGCCGAATCACCAGTGGCCCATTATCTGGAGCGGGAAAATGGGGATTTTATTGTCCAAGAGACGCCCAAGCATATTGTAGAGTGTGTGGAGAAGGAAGATGGTGAATTTTCAGTGATTGAACGTATATATCAATCGCCGCCAAGTGTCCTTCATTTGCATGACgaggatgaagatgaagacGACGAGGATGATGATGGCGACAATGAGAATGAGGAGGATGATGAAGAACAAGATGAGGATATAGCCGATTCTTCCGATCATGTTGATCATGATGGGGATGATGAGCGAGAGGAAAATAGTCATAGTCGAAATCCAAGCAAAACAACGAAAAAGTCCCGTAAATCCAAACCGAAAAGAGCTCCCAAACAGCAGTCACAACAGCGTATATGCAATGAGGAGGAATTTATGAGCTTAAGCAGCGGAGCAGAAAGCGAGCCGGAGAAGGAAAAGGAGAGACGTGAGCAGAAAATCAAGCAATTGGAGGCAACACAGCAGCCGCCACTTTGCACGGCACCATCCACAAGCGGAGCAGCAACGGGGACAGGATCAGCTGTAGTTTCCGGCACACCAGCTGCTGCTGGATCAGGGGATGGCACTTCAAATTCCACTTCCACGAAATCTAAAAAGAATCGTATTACAGTGCTTAGCGATGTCCCTCTGAATATGAACGAATATCTCGATCTAATGGGTAATATTGTAGCCTCAAGTCGCATCGGCCAAGCACGTCCATTTGCTGCCATTGCTCCTATACCTCTGGTGAAAGTGGAAAAGGAAGAGCCGCTGGACGATGACTATGATAATGAGAGTGTGGCGGAAACAGTTTCATCTATGCCTCCAGTGGAGCAAAAGCCAAGTTTGGGCACCACCAGCGTAATCCGTATGGctagcaccaccaccaccaccagcagcagtaacagcagcCTTACTACTGCCGAAGATCTCACCCAGCCGCCGCTTATGAAGATTGAGGTTGAGGCAACAGCATTGCTAGCGCCACGCTTCTCAGCACCAGCACCGACCCCACAGCGTGGTCCAAAGAAGTTGGTGATCAAACCAAAGGCCACGaccacgacgacgacaacaaaaaagacTGACATCCCCATAATACCATCATCGTCATCCACCACCAACTATTCTCCTTCTTCTACCAAACAAATCATATCAAATGGAAACGCCGATGGGGCCATTCCTACACCCGTTTTCACTGAGATAGTGCAAATCAAGAGCGAGACTCTGGAAGCTCCGTCAACGAGTAGTAATAGCATATTGGAGAAGCATCTGACTAAGAGGAAACACTCGACGGTCAATGATGACGACGCTCGTGTCCTGCTCGATTTTGCCAATTCCAAACAGTCACCGACAATGACTGGTGGAGCCACATCCAATACCACATTTGTTGTTAATGCCAATGCCTCTGGTTTTCCCTCAGCTGGATCTGTTTTTGCTGGCAATACGACGGCAAATCCTAACCAGAATGTAGGCAAACCAGGCGAGGAATATATATTGCCCGATAATAATCTTGAGGTGGATGAAATTGTGATATCATCGTCGTCTTCCTATGCCGCCTCATCCGTTTCACAGATGCAGAACCAAGTCCAGATGCAGTCCGCCGCCCATGGTCAGGGTCAGGCAAACACTGCGGCGGGATCATCATTTAATGACTTTAACTTCCTGTACCATCAGACGACAACAACACAGACAACAGGAGCTGTTTCCACGGTCGGTGCCTATTTTACACCCTTTGCCAGACAGCAGCAGATGCAGCAGACGCATCATGGAGCCAGTGAGGCCACCAATGCAGCTACTTTGGCCTCATCTTCAAGCAATTCCTCGGCATTGGATCATGATTCAATGAATGCCACTTTCCGTGTTACCAAGACACAATCCTCGCACTCCTGGTATCATCCGGTTCAGCAGCAGGCATCGACGACAACTGGAGCAACAGCGGGCGGAGGAGGTGCCTCATCATCCTCGCACAATCACGACTTGGCGGCCCAACCAACCAATTTTAATGCCGCATTGGCTGCCGTCGAATGCTGCAGTGTGGCTGTGGATGGTGATGCCAAGGCATATTTGGATCTCGATACCTGTAAACGGGAACAGTTGAGCAATAGCAGCCATTTACCATCGGTTTCTGCATCCACCACATCGTCATCATTTGCCGGTGCTGGCACTGAGAGCAGTCTGGTTGGAGGACTCAACATACGCACCGATGAGAAAATGCCCGCCAAGGGTGAAATATCAGAGCAGGAGAGCAATTGTGACATCGAGAACTCCTGGAGTCAGTCGatgTACGGTGACATATCACAACGCTACTTTAGAAATCAATTCTCTGGTGGCTATAATACCGACTGGCGACAAGACTACTATCCAGCACAGGATCTCAGCGCCCAGCAGCGGGAGCACAAGcgCTTTGATTTTAATGCGATCGACGAGGAAGTTTCCTCTATGTCCAGAAAGAGTTCACCTTTACCCACCGCTTCCACATCATCGTCATCCTCGGCATTGTTGGCTGGTCCACCAATAGCCTCCACCTCTAGGGCGGCAGCTGAGGCAGCGGCAGAAGCAGCTGCAGCTGTCGCCGTATTGGCTCAACGTAAACCGCCGCCGCGTCGCAAAATCTACAAGTGTCCCCACTGTGAAGCCATCTTTGAGAAACTAAAGGAACGGAATGCCCATATGATTGGCGAGCATAACTATGTGCGTCAGAATCGTCGCTTGATTTGCACACAACCGTTGGTCAGTTCGTCGAGCATGTTGCCCCCTcagccacagcaacaacaacaacaccaaccgATGCTACTCCAAGCTGGTCATGGATTAATGCAAGAGGATTCAAAAGATGGCATTGTTAAGATCAAGCAGGAGCATTGCCAGGACAAGCATGACACCGAGCAGCAGCTACTGGATCATGCTGAACTGGCTGACATGAAGGATGCTGAACTGCTTGGACATGTCGCTGTAACGGACGGTGGTGATGTTAAACCACCAGGTGTTGGTGGTGATCTAGATGAAAAGCCAGCCATACCGCCTCTGGCAATGACCACACCCGCTGCCAAATTGGCAGCCCTATACCGAATGTTGATGGCCTACAACGAATCCAAACTTGGCCAAGAGCGCAACAGCATTAGCGAACTGGAACAGAAGGCCATGGAGAAATCCATATTTCTGTGCTATGTGTGTCGCACTGATTTCCCATCCGTCAAGCTGTACGATGCACATCTCACAGAGCATCCGGCCGAGTGTTTTACCTGTGGTAAGAAATTCTATCGCTGGAAGAATTTTTCACTCCATCTGAAACGTCACTTGGGCTGGAAGGAGTTTGGCTGTTGTGTATGTGACAAGAAGTTTGTGGTTCGTAGTGCCCTGGTGGAGCATATGCGTATGCATACTGGCCAGACACCGCTCAAGTGCAAAATTTGCGGTAAAAAGTTCAAACGATATTCCAATTTGACACAGCATCGCAAGCGGCATACAAAAATGATGGTACGAAAGAAGGAATATGTATGCCATTGCGGTGAGGTGTTGCCTTCAAAGGCACGGTTTCTTTGGCACAAGGAGACGCACGATCTGAAGCCCAAATGTTGCCCCTATTGTTGCGATCGCTTCGTTCATGCAAATTCCCTGCGTCGTCATATACGTTTGGCCCATTCCGATAAATTTGATTATGCCGAACCCATGGAATGCCCAATGTGCAAACAGATCTTTGCCAAGACCTCAATTAAGGCACACATGGCTACACATTCGACAGATCCTCAATACGATTGCGCCATCTGTAACAAGAGCTTCTCAACCAAATGGAATCTTAAAATCCACTCCTGGGTGCATGCCAATCGCACTGCCAAACCCTTCAAGTGCGAATACTGTCCCAAGGCATTTGTGCGTGAGCTGGACTTTAAGAATCACATCAATGCCCACAAGCAGATAAAGCCGTATACGTGTGAGTATTGCGGCTGCAAATTTATACGTAAATACAATTATATGCGGCATCGGCGCGAACATCATGGCAACAAGATGTTCACCTGTGATCAGTGCGACAAGTCTTTCCATCGACACTACTATCTGATTGAGCATCGTCGAATTCATACTGGGGAACGACCCTTTCATTGCACCATCTGCGGCAAAAGCTccacaacaaaaaccaatcacaacaagcATCTGAAGATCCATCATTCGCGCGATCCATTCACAGTGGAGGTTTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNNSNGMGSALAAAMLATSVTDNATSPSASATTSASSSSNTIVDVKPSIKTLTTGKVLSSQPAVASPPPLSSSIAGSTTNKLNNPPIKATLKSAPPMPITTLTEASATKPSAPTTTTIYQPTLATSDFGYDQQGTAPPSSQQQQQHSYSRGATATLVIPQVPQQHFLANQQQQQHQQQALFAHQQTQPGLKYTYGNTSLPPPPPLQIFTQQQQASTQQTQSHQKPPPAYGAAISQIRSQHNQNKQQQHHHHHQQHHLNLHHNINLAPPTNGTGKQQQQSTNKVLTEVFLNPPPPPPPPTTTLPVAQPQHHPHHHHQQQQQSVMPRLPAQSTMTLQSLTTSCTSSTASSGSSSVRVSRQTNSPFGALLNAAAAAACASSSSSSSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHLHDEDEDEDDEDDDGDNENEEDDEEQDEDIADSSDHVDHDGDDEREENSHSRNPSKTTKKSRKSKPKRAPKQQSQQRICNEEEFMSLSSGAESEPEKEKERREQKIKQLEATQQPPLCTAPSTSGAATGTGSAVVSGTPAAAGSGDGTSNSTSTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGQARPFAAIAPIPLVKVEKEEPLDDDYDNESVAETVSSMPPVEQKPSLGTTSVIRMASTTTTTSSSNSSLTTAEDLTQPPLMKIEVEATALLAPRFSAPAPTPQRGPKKLVIKPKATTTTTTTKKTDIPIIPSSSSTTNYSPSSTKQIISNGNADGAIPTPVFTEIVQIKSETLEAPSTSSNSILEKHLTKRKHSTVNDDDARVLLDFANSKQSPTMTGGATSNTTFVVNANASGFPSAGSVFAGNTTANPNQNVGKPGEEYILPDNNLEVDEIVISSSSSYAASSVSQMQNQVQMQSAAHGQGQANTAAGSSFNDFNFLYHQTTTTQTTGAVSTVGAYFTPFARQQQMQQTHHGASEATNAATLASSSSNSSALDHDSMNATFRVTKTQSSHSWYHPVQQQASTTTGATAGGGGASSSSHNHDLAAQPTNFNAALAAVECCSVAVDGDAKAYLDLDTCKREQLSNSSHLPSVSASTTSSSFAGAGTESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFSGGYNTDWRQDYYPAQDLSAQQREHKRFDFNAIDEEVSSMSRKSSPLPTASTSSSSSALLAGPPIASTSRAAAEAAAEAAAAVAVLAQRKPPPRRKIYKCPHCEAIFEKLKERNAHMIGEHNYVRQNRRLICTQPLVSSSSMLPPQPQQQQQHQPMLLQAGHGLMQEDSKDGIVKIKQEHCQDKHDTEQQLLDHAELADMKDAELLGHVAVTDGGDVKPPGVGGDLDEKPAIPPLAMTTPAAKLAALYRMLMAYNESKLGQERNSISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCCVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKMFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00556098;
- 90% Identity
- -
- 80% Identity
- -