Dham005003.1
Basic Information
- Insect
- Drosophila hamatofila
- Gene Symbol
- egg
- Assembly
- GCA_035045345.1
- Location
- JAWNPA010000012.1:24744707-24749199[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-14 7.2e-11 41.7 0.0 5 75 917 980 914 982 0.90
Sequence Information
- Coding Sequence
- ATGGAATCGGAGTCTGCAACAATGGAGTGTTCGGAAAACGACGATGCAGCATCAGTTGACCCTTCAATTGAGGCAACGGCTTTGCCGGCTGGAAAATCAAGCACAggggcagagacagaggcagagatgGAACAAGAGGAAAAGACAGAAGGCGAAGAGAAGATGTCTTTGGATGATGAAGATCACGATGAGCCATCGCAGGCGACCTCTGAATCTAAAGAATTGGAGAAATCAGATGCTACTGAACAGGACAAGAATGTCACAGAAATTACATCTGATGAAAAAACAGAAGAATCTTCAATTATAAAACTTGATTCGGCTAAACCAATCGAAACTGATTTGGATAGCAGCATTGAACTAATCAGTAGCCCAATTTCCGAAAAGCTGGAAACCGCAGATAAAGATAACAAGGGTTCAACTGAGGAAACTGATGCAGGAAAGGAATGTGTTGGCCCTTTAGTGGACTCTACTGATGCACTTAAGTCGACCGAAGATGATTTGGATAGCAGCATTGAACTCGTCGAAAGTCCCGCATTTAAAGAATTACATGAAAAGGATAATTTAAAAGACAGTAAGTCAGATAGTGACAGCAGTATTGAACTAATTAGCAGTCCGGGTAATGGGACGGAAGACAACAAAGAAGAGGAGACTGAATCCAAAGCAGACGATAAAGAGAGTGCTAATAGTATTCCTGACAAAGAAGATAAAGCGAGCGAGGAAATGCAAACTATCAACGAACACATCACggaatcaaaaacaaatacagaaGATGCCACAATAGTAGGTGCTGAGTCCGATTCAGCTATGCCAACCAACAGCAAAACTGTGGAAGAAAAACCGATTGCATCCCAATCAATAACAGTAGATGAGGAACCGAAGCAACCCGATGAATCAATCGACGAACAAAAGGAATCTGTCAAAGATGACCCCATGGAAACAGATGCCTGTCAAgaagaaattgaaaacagCTGTTTAGTCAAGATACAAGAAGAAGATTATAAGGAAACGAAACCCGATGTTGACTCAAAAGAAACCGTTGACTATGAGGAGGATAACGAAATCTACTACAAGAAGGATTGCCTCAACTGCAATTGCGAAAAGCTGCACAAGCAATACGTGCGCGCTAGCTTAGCAGCTCTCAACTACTACAAGGTGCCTAGGAAGGCCCACAAGCGACAGTACATATGCATGGGTTGCTATGACACAGCCATGGACATGTATGAGGACTATGCGGGTCACTTAGTGGCcaagcagccgctgctgttgcgcaGCTTCAACCAGAATCATGCGGACTTTGTAGCACTTGACAGTagcgaggaggaggaagacGATGATGAGCAGAGCAAACCGGAGTTCTCATCAAATGATTTACAACTAATTGAGAATGAGCTAGAGGATGCCATAAAAACTGTTATAAACAAAGTTGATTTGGACGACCAAATGGCTTGGTCGAAAAGCATACTTCAGGCAAAATCGCAGCGCATAGGTCAAGAAATCGAGATGGTCAATGACGAGCTTTGCAAGTTGCAAAATATGGCAGACAAAATGCACTTTGCTTTGTACAGTTCATGTCAAGTGGTTCACAAGCATTTGCCACCACTTGATCTGTACCACAACATGAACGATTATGTGCAAGTGCCACCCGCTGGTGAGATAGAACGTCCACCCATTCAGCTGAATGAGACCTACTATGCAGTGAAGAACAAAGCAATTGCCAGTTGGGTCTCAGTCAAAGTGATTGAGTTTACGGAGAGCTCTACGGTGGGCGGcaacttaattaaaagttataagATTAAATATCTGAATACACCATATCAAATGGTGAAAACTGTAACGGCCAAACACTTGGCCTACTTTGAACCGCCGCCAGTGCGTCTAACTATAGGCACTCGTGTTATAGCCTACTTCAATGGCAGCACTTTATCGCGCGGCAAAGAAAAAGGAGTCGTACCCAGCGCATTCTATCCGGGCATCATAGCGGAACCCTTAAAGCAAGCCAATCGCTTTAGATATCTAATATTTTACGATGACGGCTACACACAGTATGTGCAGCATAGCGATGTGCGTTTGGTATGCCAGGCGTCGGAAAAAGTGTGGGAGGACGTACATCCCGGCTCACGTGACTTTATACAAAAGTATGTGGAGAAATATTCTGTGGATCGACCTATGGTGCAGTGCACCCGTGGCCAGAATATGAACACAGAATCCAATGGCACCTGGTTGTATGCGCGCGTGATTGACATTGACTGCAGTCTGGTGCAGATGCAGTTCGATGATGACAAGAATCATACTGAGTGGATCTATCGCGGTTCCCTGCGTCTAGGTCCCGTATTCAAGGAGACACAGAATGCACTCAACAGCGCCAATGCTATGCAACAGCATCGTGTTCCACGCCGCACTGAGCCTTTTATACGATACACCAAGGAAATGGAGACGAGCAGCAGACAGGTTAACCAGCAAATGCGCGCCATTGCCCGGAAGAGCAGCTCCGCACCACAGAATGTAAATatgtcgtcatcgtcatcatctgcggcagcggctgctgccaatgctgctgctgctgcagctgcagcccgGAACACTGTTCGACATTTGAACAACTCCACCATCTATGTGGACGACGAAAATCGACCCAAGGGGCACGTCGTGTACTTCACTGCCAAGCGTAATCTGCCACCTAAGATGTATACGCCACATGAATGTACGCCGGCCTGTCTGTTCAAGATCATTCATCGCCTGGATAGCTATAGTCCGTTAGCCAAGCCGTTGCTCTCTGGTTGGGAACGTTTGGTATTTAAGCAGAAGGCCAAGCGGAATGTTGTCTATCGTGGTCCTTGTGGCAAGAGTTTTCGTAATCTGGCCGAAGTACACACGTATCTGCGTGCCACAGAGAATGTGCTAAACGTGGAAAACTTTGATTTTACACCTGACCTACGTTGCCTGGCGGAGTACTCCATAGATCCCACTATTGTTAAAGAAGCGGACATATCTAAGGGTCAAGAAAAAATGGCCATACCGCTCGTTAACTATTATGACAACACATTGCCACCGCCGTGTACGTATGCCAAGCAGCGCATACCGACAGAGGGAGTGCATCTTAATCTCGACGAGGAATTCCTGGTGGGCTGCGACTGTGAGGATGATTGCTCGGACAAATCAAAATGTGCCTGCTGGCAGCTGACAGTTGCAGGTGTCCGCTACTGTAATCCCAACAAGCCGATCGAAGAGATTGGCTATCAATACAAACGTCTGCACGAGCATGTCCCCACTGGAATCTATGAGTGTAACTCACGTtgtaaatgcaaaaagaaCTGTTTAAATCGTGTGGTCCAACATTCACTTGAAATGAAGCTGCAGGTGTTCAAGACCTCGAATCGGGGTTGGGGTTTGCGCTGCGTCAACGATATACCGAAAGGTGCATTCATATGCATTTATGCTGGTCACTTGCTAACCGAAACTATGGCCAACGAAGGTGGCTTGGATGCCGGTGATGAGTATTTTGCCGATTTGGACTACATCGAGGTGGCCGAGCAGTTAAAAGAGGGCTACGAATCGGATGTTGAGCACTCAGCAGCGGAAGAGGAGGAAGACACTTATGTCCCAGATCCTGAGGATGATGCGGATTTCATGCCCGCTAAGTATTATCAACCGCGCAAAAAGGATAAACTACGAGTCTCCCGCAGCCACTCCACCCAATCCACGGAGCAGGACTCACAGGAGAGAGCTGTGATTAACTTCAATCCGAATGCAGATCTCGATGAAACAGTGCGCGAGAACTCGGTGCGTCGACTCTTTGGCACAGATGAAGCACCCTACATAATGGATGCCAAAACAACTGGCAATTTGGGGCGCTACTTTAATCATTCGTGTGCACCCAATTTGTTTGTGCAGAACGTGTTCGTGGACACGCACGATCTACGTTTTCCATGGGTTGCTTTCTTCTCGGCCAACCACATACGCTCCGGCACCGAACTTACCTGGAATTATAACTATGAGGTGGGCGTGGTACCTGGCAAAGTGCTTTATTGTCAATGCGGAGCAACCAACTGTCGAATAcgtttactttaa
- Protein Sequence
- MESESATMECSENDDAASVDPSIEATALPAGKSSTGAETEAEMEQEEKTEGEEKMSLDDEDHDEPSQATSESKELEKSDATEQDKNVTEITSDEKTEESSIIKLDSAKPIETDLDSSIELISSPISEKLETADKDNKGSTEETDAGKECVGPLVDSTDALKSTEDDLDSSIELVESPAFKELHEKDNLKDSKSDSDSSIELISSPGNGTEDNKEEETESKADDKESANSIPDKEDKASEEMQTINEHITESKTNTEDATIVGAESDSAMPTNSKTVEEKPIASQSITVDEEPKQPDESIDEQKESVKDDPMETDACQEEIENSCLVKIQEEDYKETKPDVDSKETVDYEEDNEIYYKKDCLNCNCEKLHKQYVRASLAALNYYKVPRKAHKRQYICMGCYDTAMDMYEDYAGHLVAKQPLLLRSFNQNHADFVALDSSEEEEDDDEQSKPEFSSNDLQLIENELEDAIKTVINKVDLDDQMAWSKSILQAKSQRIGQEIEMVNDELCKLQNMADKMHFALYSSCQVVHKHLPPLDLYHNMNDYVQVPPAGEIERPPIQLNETYYAVKNKAIASWVSVKVIEFTESSTVGGNLIKSYKIKYLNTPYQMVKTVTAKHLAYFEPPPVRLTIGTRVIAYFNGSTLSRGKEKGVVPSAFYPGIIAEPLKQANRFRYLIFYDDGYTQYVQHSDVRLVCQASEKVWEDVHPGSRDFIQKYVEKYSVDRPMVQCTRGQNMNTESNGTWLYARVIDIDCSLVQMQFDDDKNHTEWIYRGSLRLGPVFKETQNALNSANAMQQHRVPRRTEPFIRYTKEMETSSRQVNQQMRAIARKSSSAPQNVNMSSSSSSAAAAAANAAAAAAAARNTVRHLNNSTIYVDDENRPKGHVVYFTAKRNLPPKMYTPHECTPACLFKIIHRLDSYSPLAKPLLSGWERLVFKQKAKRNVVYRGPCGKSFRNLAEVHTYLRATENVLNVENFDFTPDLRCLAEYSIDPTIVKEADISKGQEKMAIPLVNYYDNTLPPPCTYAKQRIPTEGVHLNLDEEFLVGCDCEDDCSDKSKCACWQLTVAGVRYCNPNKPIEEIGYQYKRLHEHVPTGIYECNSRCKCKKNCLNRVVQHSLEMKLQVFKTSNRGWGLRCVNDIPKGAFICIYAGHLLTETMANEGGLDAGDEYFADLDYIEVAEQLKEGYESDVEHSAAEEEEDTYVPDPEDDADFMPAKYYQPRKKDKLRVSRSHSTQSTEQDSQERAVINFNPNADLDETVRENSVRRLFGTDEAPYIMDAKTTGNLGRYFNHSCAPNLFVQNVFVDTHDLRFPWVAFFSANHIRSGTELTWNYNYEVGVVPGKVLYCQCGATNCRIRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00544486; iTF_00532365; iTF_00476619; iTF_00473057; iTF_00549546; iTF_00493643; iTF_00599580; iTF_00512715; iTF_00540363; iTF_00554379; iTF_00519918; iTF_00572593; iTF_00502519; iTF_00545233; iTF_00479479; iTF_00559482; iTF_00551582; iTF_00573312; iTF_00475212; iTF_00616898; iTF_00563171; iTF_00526570; iTF_00550890; iTF_00530947; iTF_00490774; iTF_00509810; iTF_00568246; iTF_00586670; iTF_00546649;
- 90% Identity
- iTF_00473057; iTF_00479479; iTF_00544486; iTF_00549546; iTF_00476619; iTF_00532365; iTF_00540363; iTF_00554379; iTF_00545233; iTF_00559482; iTF_00551582;
- 80% Identity
- -