Basic Information

Insect: Drosophila asahinai
Gene Symbol: -
Assembly: GCA_008042795.1
Location: VNJZ01003740.1:92810-94264[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.28 2.9e+03 -1.3 1.4 35 47 33 44 17 52 0.70

2 3 1.3e-05 0.14 12.5 0.7 18 48 48 78 39 83 0.83

3 3 2.8e-06 0.029 14.7 0.0 21 49 135 163 131 168 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.28	2.9e+03	-1.3	1.4	35	47	33	44	17	52	0.70
2	3	1.3e-05	0.14	12.5	0.7	18	48	48	78	39	83	0.83
3	3	2.8e-06	0.029	14.7	0.0	21	49	135	163	131	168	0.81

Sequence Information

Coding Sequence: ATGCTGAGCGAAAACCAGGACACTGAGGACGAGTGCGAGGAGTTCATCGCGAGCCGGAACCTGCGCTGCAGCCTGGCCGGATGCCCATACCGGACGAACAGATCCCACAACCTGTGGCGTCATGAGGAGCGGCACAAGCGCTGCTCGGCAGAACCGAAGCCATTTGGCTGTCCCGTCTGCATCTACAGCTCTGATAAAATCGGAAACCTGAAGCGGCACGTTGCTATAAGGCATCCCGACGCGGCGCCAATCGAAGAAGATCCGGATGGGCCGGAAATTCAGCTGCCGCCCGCTGAGACCCGCCACTTTAGGATTCAGTGCCAGGTGATGGGGTGCCGGTATGAAACGAATCGAGCGTACGACCTGAAGCGCCACATGTTTGTGCACAACAACGTCGAGAAGAGCCACAAGACGTACAAGTGCTCGCTGTGCATGTACAGCTCGGATCGGAAGGCGAACCTGAAGCGGCATCTGGAGCTTCGACACTCTGGCATCGAGGGCACCATTAAGACAGCCGATGAGTTAAgggaggagcagcagatgCTGGAGGAGCGGACGCAGCACGAGGCTGTGCTCGATGGGTTGATAGAAGATCTTGACGAGGTCGATGTACAGGTcaatgaggaggaggaggagacaAAGGTGGAAAAGCCGCAGGTCAAGATAGAATATGTGTACGAGCAGATGGCTGAGGATCCTCCCCTGATCACGATATCCACGTGCAAGCCACCGATACTCCAAGGCGACATCAGCGACAAGCAAGTGATTGCTGTCAACGTGAATGGCCAGCTGCGTTGGTTCCAATCAATCGATCCGCCGCCTGGCGTTTCCTCTAAACTCCAACTGGCCctggaggagcaggaacagcaggCTGCTTCGGCCCAGCAGCAAATGGACGAGCTGGACGATGAGTTGGCCTTGTCCCTGGCCGAGCAGgatcaggaggaggagctgcttgTGGAAATGCTAACCGAGGACCAGCCGGCGGAAAAGGATCTAGCGTGGAGTTTTCATATTTCCAACGAAAAGGTGGCGGAGGAGACTACGGTAACTCCCAGCCAGAACCAGAAGGAAGATGCAGACTTCCCCATTTGGTGGGACGATGGCGAATATACAAAGATGCACAAGAATCAAACGTTTCGGGATCTCCGGCGAAAACTCTCAAAAGCGACTGTGCAACGCATCCTGCGCGACATCTATGACATATACTACAAGCCCTTCAAAGAGGAACGCAAACAGTTCGAGGTGTTCCCGATCAAGGACTCGTGGCTTTGTGCCACTCGAATGACACGCATGCAGATAATTAAGGACATGTACTCGAAACAGGGCACATGA
Protein Sequence: MLSENQDTEDECEEFIASRNLRCSLAGCPYRTNRSHNLWRHEERHKRCSAEPKPFGCPVCIYSSDKIGNLKRHVAIRHPDAAPIEEDPDGPEIQLPPAETRHFRIQCQVMGCRYETNRAYDLKRHMFVHNNVEKSHKTYKCSLCMYSSDRKANLKRHLELRHSGIEGTIKTADELREEQQMLEERTQHEAVLDGLIEDLDEVDVQVNEEEEETKVEKPQVKIEYVYEQMAEDPPLITISTCKPPILQGDISDKQVIAVNVNGQLRWFQSIDPPPGVSSKLQLALEEQEQQAASAQQQMDELDDELALSLAEQDQEEELLVEMLTEDQPAEKDLAWSFHISNEKVAEETTVTPSQNQKEDADFPIWWDDGEYTKMHKNQTFRDLRRKLSKATVQRILRDIYDIYYKPFKEERKQFEVFPIKDSWLCATRMTRMQIIKDMYSKQGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00606676;
90% Identity: iTF_00480497; iTF_00483330; iTF_00609500; iTF_00609533; iTF_00483296; iTF_00590578; iTF_00590579; iTF_00590614; iTF_00590615; iTF_00532022; iTF_00531984; iTF_00606676;
80% Identity: iTF_00480497;