Daur019955.1
Basic Information
- Insect
- Drosophila auraria
- Gene Symbol
- -
- Assembly
- GCA_008042615.1
- Location
- VNJW01014148.1:10284-11747[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.16 1.7e+03 -0.5 0.3 35 48 33 45 19 50 0.75 2 3 2.2e-06 0.023 15.0 0.4 13 48 43 78 41 83 0.90 3 3 2.8e-06 0.029 14.7 0.0 21 49 135 163 131 168 0.81
Sequence Information
- Coding Sequence
- ATGCTGAGCGAAAACCAGGACACTGAGGACGAATGCGAGGAGTTCATCGCAACCCGGAGCCTGCGCTGCAGCCTGGCCGGATGCCCATACCGGACGAACAGATCCCACAACCTGTGGCGGCACGAGGAGCGGCACAAGCGCCGCTCGGTGGAACCGAAGCCATTTGGCTGTCCCGTCTGCATCTACAGCTCTGATAAAATCGGAAACCTGAAACGGCACGTTGCTATTCGACATCCCGACGCGGCGCCAATTGAAGAAGATCTCGATGGGCCGGAAGTTCAGCCCCAGCCCGCTGAGACCCGCAGCTTCAGGATTCATTGCCAGGTGATGGGCTGCCGGTATGAAACGAATCGAGCGTATGACCTGAAGCGGCACATGTTTGTGCACAACAACGTCGAGAAGAGCCACAAGACGTACAAGTGCTCCCTGTGCATGTACAGCTCGGATCGGAAGGCGAACCTGAAGCGGCATCTGGAGCTACGACACTCTGGCATCGAGGGCACCATCAAGACAGTCGATGAGCTGAGGGAGGAGCAGCGGATGCTGGCGGAGCAGACCCAGCACGAGGAGGTGCTTAATGGCTTGATAGAGGATATTGATGAAGTCGATGTACAGGTGCGGGAGGAAGAGGCGAAGGTGGAGCAGCCGCAAGTGAAGATGGAATATGTGTACGAGCAGCTGGGTGAGAATCCTCCCCTGATCACAATATCCACCTGCAATCCACCGATTCTCCAAGGCGACATCAGCGATAAGCAAGTGATTGCTGTCAACGTGAATGGTCAGTTGCGTTGGTTCCAATCAATCGATCCGCCGCCTGGCGTTTCCTCTAAGCTCCAACTTGCCctggaggagcaggaacagcagGCTGCTTCGGCCCAGCAGCAAATGGACGAGCTGGACGATGAGTTGGCCATGTCCCTGGCCGAGCAggaccaggaggaggagctgcttgTGGAAATGCTAACCGAGGACCAGCCGGCGGAAAAGGATCTGGCTTGGAGTTTTCACATTTCCAACGAAAAGTTGGAGGCCCCGGTAACTCCCAACGAAGAAGGCAAGCAGGAGAACCAGAAGGAAGATGCAGATTTTCCCACTTGGTGGGACGATGGCGAATATACAAAGATGCACAAAAATCAAACGTTTCGGGATCTCCGGCGAAAGCTCTCAAAGGCGAATGTGCAGCGCATCCTGCGTGACATCTATGATATATACTACAAGCCCTTTAAAGAGGAACGCAAACAGTGCGAGGTGTTCCAGATCAAGGACTCGTGGCTGTGCGCCACTCGGATGACACGAATGCAGATAATTAAGGACATGTACTCCAAACAGGGCACATGA
- Protein Sequence
- MLSENQDTEDECEEFIATRSLRCSLAGCPYRTNRSHNLWRHEERHKRRSVEPKPFGCPVCIYSSDKIGNLKRHVAIRHPDAAPIEEDLDGPEVQPQPAETRSFRIHCQVMGCRYETNRAYDLKRHMFVHNNVEKSHKTYKCSLCMYSSDRKANLKRHLELRHSGIEGTIKTVDELREEQRMLAEQTQHEEVLNGLIEDIDEVDVQVREEEAKVEQPQVKMEYVYEQLGENPPLITISTCNPPILQGDISDKQVIAVNVNGQLRWFQSIDPPPGVSSKLQLALEEQEQQAASAQQQMDELDDELAMSLAEQDQEEELLVEMLTEDQPAEKDLAWSFHISNEKLEAPVTPNEEGKQENQKEDADFPTWWDDGEYTKMHKNQTFRDLRRKLSKANVQRILRDIYDIYYKPFKEERKQCEVFQIKDSWLCATRMTRMQIIKDMYSKQGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00606676;
- 90% Identity
- iTF_00480537;
- 80% Identity
- iTF_00483296;