Basic Information

Insect: Drosophila triauraria
Gene Symbol: -
Assembly: GCA_014170255.2
Location: CM024334.1:12418185-12419642[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.19 1.7e+03 -0.8 0.6 35 48 33 45 18 50 0.75

2 3 2.4e-06 0.021 14.9 0.4 13 48 43 78 41 83 0.90

3 3 2.8e-06 0.024 14.7 0.0 21 49 135 163 131 168 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.19	1.7e+03	-0.8	0.6	35	48	33	45	18	50	0.75
2	3	2.4e-06	0.021	14.9	0.4	13	48	43	78	41	83	0.90
3	3	2.8e-06	0.024	14.7	0.0	21	49	135	163	131	168	0.81

Sequence Information

Coding Sequence: ATGCTGAGCGAAAACCAGGACACTGAGGACGAATGCGAGGAGTTCATCGCAACCCGGAACCTGCGCTGCAGCCTGGCCGGATGCCCATACCGGACGAACAGATCTCACAACCTGTGGCGGCACGAGGAGCGGCACAAGCGCCGCTCGGTGGAACCGAAGCCATTTGGCTGTCCCGTCTGCATCTACAGCTCTGATAAAATCGGAAACCTAAAACGGCACGTTGCTATTCGGCATCCCGACGCGGCGCCAATCGAAGAAGATCTCGATGGGCCGGAAGTTCAGCTCCAGCCCGCTGAGACCCGCAGCTGCAGGATTCATTGCCAGGTGATGGGCTGCCGGTACGAAACGAATCGAGCGTATGACCTGAAGCGGCACATGTTTGTGCACAACAACGTCGAGAAGAGTCACAAGACGTACAAGTGCTCCCTGTGCATGTACAGCTCGGATCGAAAGGCAAACCTGAAGCGGCACCTGGAGCTACGACACTCTGGCATCGAGGGCACCATCAAGACAGTCGATGAGCTGAGGGAGGAGCAGCGGATGCTGGCGGAGCAGTCGCAGCACGAGGAGGTGCTTAATGGCTTGATAGAGGATATTGATGAGGTTGATGTACAGGTGCAGGAGGAAGAGGCGAAGGTGGAGCAGCCGCAAGTCAAGATGGAATATGTGTACGAGCAGCTGGCTGAGGATCCTCCCCTGATCACAATATCCACCTGCAATCCACCGATTCTCCAAGGCGACATCAGCGATAAGCAAGTTATTGCTGTCAACGTGAATGGCCAACTGCGTTGGTTCCAATCAATCGATCCGCCGCCTGACGTTTCCTCTAAACTCCAACTTGCCCTGCAGGAGCAGGAACAGCAGGCTGCTTCGGCCCAGCAGCAAATGGACGAGCTGGACGATGAGTTGGCCATGTCCCTGGCCGAGCAGGATCAGGAGGAGGAGCTGCTTGTGGAAATGCTAACCGAGGACCAGCCGGCGGAAAAGGATCTGGCTTGGAGTTTTCACAGTTCCAACGAAAAGTTGGAGACCCCGAAGACTCCCAACGAAGAAGGCAAGCAGGAGAACCAGAAGGAAGATGAAGACTTCCCCATTTGGTGGGACGATGGCGAATATACGAAGATGCACAAAAATCAAACGTTTCGGGATCTCCGGCGAAAGCTCTCAAAAGCGAATGTGCAGCGCATCCTGAGTGACATCTATGATATATACTACAAGCCCTTTAAAGAGGAACGCAAGGAGCGCGAGGTGTTCCAGATTAAGGACTCGTGGCTATGCGCCACTCGGATGACACGTATGCAGATAATTAAGGACATGTACTCGAAACAGGGCACATGA
Protein Sequence: MLSENQDTEDECEEFIATRNLRCSLAGCPYRTNRSHNLWRHEERHKRRSVEPKPFGCPVCIYSSDKIGNLKRHVAIRHPDAAPIEEDLDGPEVQLQPAETRSCRIHCQVMGCRYETNRAYDLKRHMFVHNNVEKSHKTYKCSLCMYSSDRKANLKRHLELRHSGIEGTIKTVDELREEQRMLAEQSQHEEVLNGLIEDIDEVDVQVQEEEAKVEQPQVKMEYVYEQLAEDPPLITISTCNPPILQGDISDKQVIAVNVNGQLRWFQSIDPPPDVSSKLQLALQEQEQQAASAQQQMDELDDELAMSLAEQDQEEELLVEMLTEDQPAEKDLAWSFHSSNEKLETPKTPNEEGKQENQKEDEDFPIWWDDGEYTKMHKNQTFRDLRRKLSKANVQRILSDIYDIYYKPFKEERKEREVFQIKDSWLCATRMTRMQIIKDMYSKQGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00606676;
90% Identity: iTF_00480537;
80% Identity: iTF_00609500;