Druf001686.1
Basic Information
- Insect
- Drosophila rufa
- Gene Symbol
- -
- Assembly
- GCA_018153105.1
- Location
- JAECXS010000096.1:17999338-18000783[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4 5.2e+03 -2.6 0.0 37 44 18 25 12 30 0.82 2 4 0.74 2.8e+03 -1.7 1.5 35 47 33 44 18 53 0.74 3 4 3.3e-05 0.13 12.2 1.0 18 48 48 78 40 83 0.83 4 4 5.5e-06 0.021 14.7 0.0 21 49 135 163 131 168 0.81
Sequence Information
- Coding Sequence
- ATGCTGAGCGAAAACCAGGACACTGAGGACGAGTGCGAGGAGTTCATCGCGAGCCGGAACCTGCGCTGCAGCCTGGCCGGATGCCCACACCGGACGAACAGATCCCACAACCTGTGGCGTCATGAGGAGCGGCACAAGCGCTGCTCGGCAGAACCGAAGCCATTTGGGTGTCCCGTCTGCATCTACAGCTCTGATAAAATCGGAAACCTGAAGCGGCACGTTGCTATAAGACATCCCGACGCGGCGCCAATCGAAGAAGATCCGGATGGGCCAGAAATTAAGCTGCCGCCCGCTGAGACCCGCCACTTTAGGATTCAATGCCAGGTGATGGGCTGCCGGTATGAAACGAATCGAGCGTACGACCTGAAGCGCCACATGTTTGTGCACAACAACGTCGAGAAGAGCCACAAGACGTACAAGTGCTCGCTGTGCATGTACAGCTCGGATCGGAAGGCGAACCTGAAGCGGCATCTGGAGCTTCGACACTCTGGCATCGAGGGCACCATTAAGACAGCCGATGAGTTGAGGGAGGAGCAGCAGATGCTGGAGGAGCGGACGCAGCACGAGGCGGTGCTCGATGGGTTGATAGAAGATCTTGACGAGGTCGATGTACAGGTCAATGAGGAGGAGGAGACAAAGGTGGAACAGCCGCAGGTCAAGGTAGAATATGTGTACGAGCAGCTGGCTGAGGATCCTCCCCTGATCACGATATCCACGTGCAAGCCACCGATACTCCAAGGCGACATCAGCGACAAGCAAGTGATTGCTGTCAACGTGAATGGCCAGCTGCGTTGGTTCCAATCAATCGATCCGCCGCCTGGCGTTTCCTCTAAACTCCAACTGGCCCTGGAGGAGCAGGAACAGCAGGCTGCTTCGGCCCAGCAGCAAATGGACGAGCTGGACGATGAGTTGGCCTTGTCCCTGGCCGAGCAGGATCAGGAGGAGCTGCTTGTGGAAATGCTAACCGAGGACCAGCCGGCGGAAAAGGATCTAGCGTGGAGTTTTCATATTTCCAACGAAAAGGTGGCGGAGGAGACTACGGTAACTCCCAGCCAGAACCAGAAGGAAGATGCAGACTTCCCCATTTGGTGGGACGATGGCGAATATACAAAGATGCACAAGAATCAAACGTTTCGGGATCTCCGGCGAAAACTCTCAAAAGCGACTGTGCAACGCATCCTGCGCGACATCTATGACATATACTACAAGCCCTTCAAAGAGGAACGCAAACAGTTCGAGGTGTTCCCGATCAAGGACTCGTGGCTTTGTGCCACTCGAATGACACGCATGCAGATAATTAAGGACATGTACTCGAAACAGGGCACATGA
- Protein Sequence
- MLSENQDTEDECEEFIASRNLRCSLAGCPHRTNRSHNLWRHEERHKRCSAEPKPFGCPVCIYSSDKIGNLKRHVAIRHPDAAPIEEDPDGPEIKLPPAETRHFRIQCQVMGCRYETNRAYDLKRHMFVHNNVEKSHKTYKCSLCMYSSDRKANLKRHLELRHSGIEGTIKTADELREEQQMLEERTQHEAVLDGLIEDLDEVDVQVNEEEETKVEQPQVKVEYVYEQLAEDPPLITISTCKPPILQGDISDKQVIAVNVNGQLRWFQSIDPPPGVSSKLQLALEEQEQQAASAQQQMDELDDELALSLAEQDQEELLVEMLTEDQPAEKDLAWSFHISNEKVAEETTVTPSQNQKEDADFPIWWDDGEYTKMHKNQTFRDLRRKLSKATVQRILRDIYDIYYKPFKEERKQFEVFPIKDSWLCATRMTRMQIIKDMYSKQGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00606676;
- 90% Identity
- iTF_00480537;
- 80% Identity
- iTF_00590578;