Dara012449.1
Basic Information
- Insect
- Drosophila arawakana
- Gene Symbol
- MBD2_1
- Assembly
- GCA_018151165.1
- Location
- JAECWX010000455.1:1038699-1040598[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-23 2.8e-20 71.5 0.0 1 74 7 75 7 78 0.94 2 2 7.8e-06 0.021 14.3 0.0 25 76 126 186 122 187 0.90
Sequence Information
- Coding Sequence
- ATGAATCCGAGTATTACTATTGAACGTAAACGCGTTGATTGCAACGCATTACCAAAAGGTTGGCAACGCGAGGAAGTACACAGAAAATCGGGCTGCAACTCGGGCGTTGACGTTTTCTACTACAGCCCCACAGGCAAAAGAATTGAAAGCAAACCACAATTAGCTCGTCAATTGGGCGCCGAGATGTTTGACATAAGCAACTTTGATTTTCAAACCGGCAAAATGCAATTGCATCGACAAATGCCCTCGCCATCCATTTCACTATACCGATGCAATGCCGCTGGAGCAATTATAAGCAATGCTGTCACTGGTGGAAATGCTGCAAATGCGCTTAAACTTTTTGATTGTCTTTTTAATGCAATTTCTATTTGCTTTAACAGTCGCGCTCTGCGCACAGATGTCTCTTTGGTGCCCCCGATACGACAGACTGCCTCCATCTTCAAGCAGCCGGTGACAGTGGTGCGCAACCATGAGCCCAACAAGGTCAAGCACGACGCCAAACACGGTGGACAGGAAAAGCCCAAACAGCTGTTCTGGGAGAAGCGCCTGGAGAGACTGCGCGCTTGCCATGACAACGGAGAGGAGCTCGACGATATATCACTGCCAAAGACCATAAGAACCGTTGGTCCCAATGTCAACGAACAAACTGTTCTCCAATCGGTGGCCACGGCTTTGCATATGCTCAACGCTGGCGTGCATGGACAGAGCTCCACGAAGGCTGAGCTAACAAAGAACGCCATGGCATTCATGAATCCGGAACAGCCGCTCATGCATGCGGTTATAATCTCAGAGGACGACATACGAAAGCAGGAGGACCGTGTGGGTTTGGCACGACGAAAGCTGCAGGATGCTCTTAAGACATGA
- Protein Sequence
- MNPSITIERKRVDCNALPKGWQREEVHRKSGCNSGVDVFYYSPTGKRIESKPQLARQLGAEMFDISNFDFQTGKMQLHRQMPSPSISLYRCNAAGAIISNAVTGGNAANALKLFDCLFNAISICFNSRALRTDVSLVPPIRQTASIFKQPVTVVRNHEPNKVKHDAKHGGQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGLARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00556517; iTF_00579273; iTF_00547349; iTF_01553957; iTF_01559752; iTF_01551723; iTF_01550990; iTF_01548847; iTF_01558288; iTF_01557553; iTF_01550270; iTF_01552448; iTF_01556825;
- 90% Identity
- iTF_00579273;
- 80% Identity
- -