Znig003744.1
Basic Information
- Insect
- Zaprionus nigranus
- Gene Symbol
- MBD2_1
- Assembly
- GCA_018903425.1
- Location
- JAEIGD010000001.1:3768778-3770675[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-24 2.6e-20 72.1 0.1 1 74 7 75 7 78 0.94 2 2 1.4e-05 0.058 13.3 0.0 17 76 80 148 76 149 0.86
Sequence Information
- Coding Sequence
- ATGAATCCTAGCATAACAATCGAACGTAAACGCGTCGACTGCAACGCACTACCAAAAGGTTGGCAGCGCGAGGAAGTGCATAGAAAGTCTGGCTGCAATTCGGGAGTTGATGTTTTCTACTACAGCCCCACAGGCAAACGAATTGAAAGCAAGCCGCAATTGGTACGTCAACTAAGCGCCGAGATGTTTGATATAAGTAATTTTGATTTTCAAACCGGCAAGATGCATCAAATCCAGCGCCAAATGCCCTCACCGTCCATATCACTTCGCAATCTACGCTCAGATGTCTCACTGGTGCCGCCTATACGACAGACTGCCTCCATATTTAAGCAGCCGGTGACTGTGGTGCGTAATCATGAACCGAACAAGGTGAAGCACGATGCCAAACACGGTGGCCAGGAGAAACCCAAACAGTTATTCTGGGAGAAACGATTGGAACGCTTGCGGGCTTGCCACGACAACGGCGAGGAGTTGGATGACATCACACTGCCAAAGACCATTCGAACTGTCGGTCCCAATGTCAACGAACAGACTGTGCTGCAATCTGTGGCTACGGCGCTGCATATGCTGAATGCCGGCGTGCACGGCCAGAGCTCCACAAAGGCTGAGCTTACCAAGAATGCCATGGCATTCATGAATCCAGAGCAGCCGCTAATGCATGCGGTTATTATATCCGAGGATGATATACGAAAGCAGGAAGATCGCGTTGGCGTGGCACGTCGAAAATTACAGGATGCCCTCAAGACTTGA
- Protein Sequence
- MNPSITIERKRVDCNALPKGWQREEVHRKSGCNSGVDVFYYSPTGKRIESKPQLVRQLSAEMFDISNFDFQTGKMHQIQRQMPSPSISLRNLRSDVSLVPPIRQTASIFKQPVTVVRNHEPNKVKHDAKHGGQEKPKQLFWEKRLERLRACHDNGEELDDITLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00478717;
- 90% Identity
- iTF_01553957; iTF_01559752; iTF_01551723; iTF_01550990; iTF_01548847; iTF_01558288; iTF_01557553; iTF_01550270; iTF_01552448;
- 80% Identity
- -