Dpru012311.1
Basic Information
- Insect
- Drosophila pruinosa
- Gene Symbol
- MBD2
- Assembly
- GCA_018150935.1
- Location
- JAECWR010000094.1:28984249-28985877[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-23 9.6e-20 70.0 0.0 1 74 7 75 7 78 0.94 2 2 0.00037 1.4 8.7 0.0 31 76 112 166 104 167 0.88
Sequence Information
- Coding Sequence
- ATGAATCCGAGTATTACAATTGAACGTAAACGCGTTGATTGCAACGCACTACCAAAAGGTTGGCAACGCGAAGAAGTACATAAAAAATCGGGCTGCAACTCGGGAGTTGATGTTTTCTACTACAGCCCCACAGGCAAAAGAATTGAAAGCAAACCACAATTAGCACGTCAATTGGGCGCCGAGATGTTTGACATAAGCAACTTTGATTTTCAAACCGGCAAAATGCAACTGCATCGACAAATGCCCTCGCCATCCATATCGCTCTATCGATGCAATGCACAGGGCGCAATTATTAGCAATGCTGTCGCAGGTGGTAATGCTGCGAATGCTCTCAAACATGTCTCCTTGGTGCCACCAATACGGCAGACCGCCTCCATATTCAAGCAACCGGTGACAGTGGTGCGTAATCATGAACCTAACAAGGTCAAGCACGATGCCAAACACGGAGGCCAGGAGAAGCCCAAACAGTTATTCTGGGAAAAGCGCTTGGAGCGTTTACGTGCCTGCCATGACAACGGTGAGGAACTGGACGACATATCACTGCCAAAAACCATTAGAACTGTCGGTCCCAATGTCAACGAACAAACTGTACTGCAATCGGTAGCTACGGCACTGCACATGCTTAATGCTGGCGTTCACGGCCAGAGTTCCACAAAGGCTGAACTAACTAAGAATGCAATGGCATTCATGAATCCAGAACAGCCGCTTATGCATGCGGTCATTATATCTGAGGACGACATACGCAAACAAGAAGACCGTGTTGGATTAGCACGGCGTAAACTTCAAGATGCTCTTAAGACATGA
- Protein Sequence
- MNPSITIERKRVDCNALPKGWQREEVHKKSGCNSGVDVFYYSPTGKRIESKPQLARQLGAEMFDISNFDFQTGKMQLHRQMPSPSISLYRCNAQGAIISNAVAGGNAANALKHVSLVPPIRQTASIFKQPVTVVRNHEPNKVKHDAKHGGQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGLARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00478717;
- 90% Identity
- iTF_00547349; iTF_00556517; iTF_00478717;
- 80% Identity
- -