Dgri010930.1
Basic Information
- Insect
- Drosophila grimshawi
- Gene Symbol
- -
- Assembly
- GCA_018153295.1
- Location
- JAECXY010001366.1:9339520-9347451[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.7e-12 1e-08 34.5 0.0 1 40 362 402 362 405 0.90 2 4 2.6e-14 5.6e-11 41.7 0.1 2 39 417 454 416 457 0.94 3 4 6.1e-18 1.3e-14 53.4 0.0 1 45 471 516 471 516 0.98 4 4 6.2e-20 1.3e-16 59.7 0.0 1 43 523 566 523 567 0.97
Sequence Information
- Coding Sequence
- ATGAGCCGCAGCAGCAGCAGTGGCAGCCACGACCACAAAACCCAGCAGCAACAGCAGCAGCAGCTCTTGCTCCTGCTCCTGCTCCTGCAACCCTTCCAAGCAATCATGCATCCTTTACTCGTTTCCCCCGCCCAGCACAACACACCGTCGCGCATTTCCATGCCCCGTACTTCCGTTTCCGGCGCCAGCCATTTGCATCTACAGCAAGAACAACAACAAAGCAAAATTTCTTCCATTTATTCGAAGGGTCTGCTGCGCACCGCGGAACAATTGAAAATCAAGGGTCTCTGTGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCTTTGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGTGAATGCGAGCATAGTGCCCGCTGGCGACGATTCCGATAGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCAGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCAATAGCGCATCATCATGCAACCGGCGACGAGAGCAATTCGAATCTGGTGCAGCATATCAAAAGCGAGATTAAGAATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCGAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGACTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGAGCACACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGACGCCCTGCAAAATGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCGAATAAAGCATCGAAAGCGTTTGGTATTCCCTCATCGACGCTATACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATCTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAACACCTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACGCCCTGGTCTGAGGATGCTATGAACGAGGCATTGAACTCGGTGCGCGTTGGTCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGATTCAAGCGTGGCAAGTACGATGTGGTTGCCAATACCAGTGGCGTCTCGCTGAACAACACCTCGGGTAATACGACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGCATCCAAACAGAAGCGTTGAGAAAGCGCCGACGGAGCTCGCTCTGACGGAGCCGAAGACGCCATCGATTGCAGCACCACCAACACCTCCACTGAAGCCGCCACCGCCGCCGACGCCGCCGCCGTTGTCAAATTTCGCTTCAACTCGAAGCATTGGAAGCGCAAGCTGA
- Protein Sequence
- MSRSSSSGSHDHKTQQQQQQQLLLLLLLLQPFQAIMHPLLVSPAQHNTPSRISMPRTSVSGASHLHLQQEQQQSKISSIYSKGLLRTAEQLKIKGLCEPAENADDLNDAALATITVSENIQQAVVGNIVNASIVPAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLNNTSGNTTGSIEIIEHSQENSHPNRSVEKAPTELALTEPKTPSIAAPPTPPLKPPPPPTPPPLSNFASTRSIGSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00530185;
- 90% Identity
- iTF_00475137;
- 80% Identity
- -