Dmic011932.1
Basic Information
- Insect
- Drosophila micromelanica
- Gene Symbol
- -
- Assembly
- GCA_004143905.1
- Location
- SCDX01001799.1:1-17244[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4e-12 7.5e-09 34.9 0.0 1 41 296 337 296 340 0.90 2 4 2e-14 4.5e-11 42.1 0.1 2 39 351 388 350 391 0.94 3 4 4.7e-18 1e-14 53.7 0.0 1 45 405 450 405 450 0.98 4 4 4.8e-20 1e-16 60.1 0.0 1 43 457 500 457 501 0.97
Sequence Information
- Coding Sequence
- GGTTTGCTGCGCACCGCGGAACAGTTGAAAATCAAAGGCCTCTGCGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCATCGGCGACGATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGCAACATTGGCCAAAATCAAACATCTATCGTGAGTCTGCAGCAAACGGCCGACGGCAATTATATACCCGTTAGCACGGCGGGCGACGATTCCGATAGCGATAACAAGCCGCAAAAGATCTGCAAGACAGAGCAATCGGTAGCCTCCCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTCCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACATGTCGATCTGTCGTGCAATCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATGCAACTGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACAGGGCATATGGaCATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCGTCAACGACCTTATGGCAGCGTGCTCATCGATTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGACGCTCTGCAGAACGCATTGGAGGCATTGCGTTCCGGACAAATATCGGCGAACAAAGCATCGAAAGCGTTCGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGCGAGGGTATCCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAACACGTCCGTACAGAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGTATCGAATTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCAATGAACGAGGCATTGAATTCAGTGCGCGTCGGTCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGCTTCAAGCGTGGCAAGTACGATGTGGTGGCCAACACCAGTGGCGTCTCCCTGATCAACACCTCGGGCAACACGACCGGCAGCATTGAGATAATCGAGCATAGTCAGGAGAACTCG
- Protein Sequence
- GLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIGQNQTSIVSLQQTADGNYIPVSTAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINTSGNTTGSIEIIEHSQENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00530185;
- 90% Identity
- iTF_00475137;
- 80% Identity
- -