Dpar000677.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:4125725-4127353[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.17 2.1e+02 3.6 0.1 21 47 36 62 33 68 0.83 2 11 0.63 7.9e+02 1.7 0.0 25 47 75 97 66 103 0.81 3 11 0.2 2.6e+02 3.3 0.1 21 46 132 157 124 164 0.86 4 11 0.88 1.1e+03 1.3 0.0 22 45 165 188 160 191 0.83 5 11 0.045 56 5.4 0.1 20 46 190 216 184 223 0.84 6 11 9.3 1.2e+04 -2.0 0.0 18 43 251 281 242 286 0.57 7 11 0.0056 7 8.3 0.2 21 44 287 310 280 318 0.87 8 11 0.46 5.8e+02 2.2 0.0 24 52 325 353 320 354 0.84 9 11 0.0015 1.9 10.1 0.0 18 47 375 404 371 409 0.89 10 11 0.35 4.4e+02 2.5 0.0 16 44 429 457 418 462 0.77 11 11 0.04 50 5.6 0.2 21 48 490 517 468 519 0.92
Sequence Information
- Coding Sequence
- ATGCGAATTAGTACAACACGCCCCGATCGACTTTTCAAATGCGAATACTGCGATTACAAAACGATTTATGCCGCCACACTCAAGTCACACGTTTTTACgcataccggcgagaaaccgtacGAGTGTAATTTGTGCGACTACAGAAGCACAATGCCCGGAAATCTCAAGAGGCACATGAGGCTACACCTCGTTAAGAAAGAGGCCGAAGGAGCAGAACCCGAGTTCGCATGTGAGATTTGTGGTTTTAAGACGACGCAAGCCGATTATCTGAAGAAGCACTTGAAAAGGCACGACGACCGGAAACCGGATCAGAGCTTGAAGTTCGAATGTAAGCACTGCGATTACAAGACGAATCGCGCCAACACTCTCAAGAAACACGTTTTTacgcacaccggcgaaaagccgTACGAATGTAAACTGTGCGACTACAGATGCACCATGTCTGGAAATATCACGAGGCACATGAGGGTGCATCTCGCCAATGAGAAAGTTGAATCCGAGTTCACATGTGAAATTTGTGGGTTTAAAACGACGCAAAGGGATTATTTGAAGAAGCACATGAAAAGACACGGCGATCAGCCGTTTGCTTGTAAGCTGTGCGACTATAGGTGCGCCGTGTCCGGGAACTTCAAAAGGCACATGATAATGCACGAGGTAAAAGAAAAGGGCGACGAATATGAATATAAATTCACGTGTAATGTTTGCGGTTTTAAAACCATTCTAGCTAGTTACCTGAACAAGCACATGAAGCGACACAGTGGTCAGAAACCGGCCGTTTGTTTGTGGCACAAATGCGATTATTGCGATTATAAGTCGAGTCGCGCCGCCACTCTCAGAAAACATATGTTTACGCATAGtggcgagaaaccgttcgcgTGTAAACTGTGCGATTACAGCTGCAGCTCGTCCGGAAACCTCCGGAGGCACTCGCGGACGCACATGACAAAAGAAAAACTCCACGATACTGACAAAAAATTTACGTGTGAGGTCTGCAATTTTAAAACCACCAAAGCCAAATACCTGAGGAATCACATGTTGGTGCACAGTGTCGAGAAGCCGTACCAATGCGATCGCTGCGGCAACAAATTCGCCTCGAGAGCGATTTTGAAGATGCACACGATGCGACACACCGGCGAAAGACCGTACGAGTGCAACGTTTGCGGTTTTAAATGTAGCCAAAGCGGTTCACTGAAACGTCACCTCGTGTTGCACACCGGCGTGAAAACTTTCCAGTGCAACAGATGCGATTACAGGGCCGCCATAAAAGGCACCCTCACGAAACACATGGCTAAACATTCCACGGAGAAACCGTTCGAGTGCCACATTTGTAAGCACAAAACGAAAACCCGGAATCGTTTAAAGAATCACATGTTATCGCACACGGGCGAGCGGCTACACAAGTGTGACGTTTGTAATAAAAGATTCGCCCTTTACAAGGGCATGAAAAGGCACATGTTGATACATGCAGGGGAGAAACCGTTCGCGTGTAGTTTATGCGAGTACAGATCTAATCAGCAGTCGAACGTCAAAGTGCACATGAAACACAGACACAAGGAATGTGATTTTAATGAATTCATTGCAAGTAAAACTGAAGCAACGTTAACGGAAACCGATCGCttgtttcaataa
- Protein Sequence
- MRISTTRPDRLFKCEYCDYKTIYAATLKSHVFTHTGEKPYECNLCDYRSTMPGNLKRHMRLHLVKKEAEGAEPEFACEICGFKTTQADYLKKHLKRHDDRKPDQSLKFECKHCDYKTNRANTLKKHVFTHTGEKPYECKLCDYRCTMSGNITRHMRVHLANEKVESEFTCEICGFKTTQRDYLKKHMKRHGDQPFACKLCDYRCAVSGNFKRHMIMHEVKEKGDEYEYKFTCNVCGFKTILASYLNKHMKRHSGQKPAVCLWHKCDYCDYKSSRAATLRKHMFTHSGEKPFACKLCDYSCSSSGNLRRHSRTHMTKEKLHDTDKKFTCEVCNFKTTKAKYLRNHMLVHSVEKPYQCDRCGNKFASRAILKMHTMRHTGERPYECNVCGFKCSQSGSLKRHLVLHTGVKTFQCNRCDYRAAIKGTLTKHMAKHSTEKPFECHICKHKTKTRNRLKNHMLSHTGERLHKCDVCNKRFALYKGMKRHMLIHAGEKPFACSLCEYRSNQQSNVKVHMKHRHKECDFNEFIASKTEATLTETDRLFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465206; iTF_00466618; iTF_00465632;
- 90% Identity
- iTF_00465206; iTF_00466618; iTF_00465632;
- 80% Identity
- iTF_00466618;