Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:4125725-4127353[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00096 0.088 14.7 1.1 1 23 12 34 12 34 0.98

2 17 6e-06 0.00056 21.6 0.6 1 23 40 62 40 62 0.98

3 17 2.3e-05 0.0021 19.8 0.9 1 23 75 97 75 97 0.97

4 17 0.00092 0.085 14.8 4.6 1 23 108 130 108 130 0.98

5 17 6.9e-05 0.0063 18.3 2.4 1 23 136 158 136 158 0.99

6 17 5.1e-06 0.00047 21.9 2.8 1 23 168 190 168 190 0.98

7 17 0.0002 0.019 16.8 1.7 1 23 195 217 195 217 0.97

8 17 8.7e-05 0.008 18.0 1.2 1 23 230 252 230 252 0.98

9 17 6.4e-05 0.0059 18.4 3.7 1 23 263 285 263 285 0.98

10 17 1.6e-05 0.0015 20.3 3.3 1 23 291 313 291 313 0.97

11 17 0.00036 0.033 16.0 1.5 1 23 326 348 326 348 0.98

12 17 0.0084 0.78 11.7 0.7 1 23 354 376 354 376 0.98

13 17 5.9e-05 0.0055 18.5 1.6 1 23 382 404 382 404 0.96

14 17 0.0026 0.24 13.3 0.5 1 23 410 432 410 432 0.98

15 17 0.01 0.96 11.5 7.2 1 23 438 460 438 460 0.98

16 17 0.0003 0.027 16.3 2.3 1 23 466 488 466 488 0.98

17 17 0.0059 0.54 12.2 2.5 1 23 494 517 494 517 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00096	0.088	14.7	1.1	1	23	12	34	12	34	0.98
2	17	6e-06	0.00056	21.6	0.6	1	23	40	62	40	62	0.98
3	17	2.3e-05	0.0021	19.8	0.9	1	23	75	97	75	97	0.97
4	17	0.00092	0.085	14.8	4.6	1	23	108	130	108	130	0.98
5	17	6.9e-05	0.0063	18.3	2.4	1	23	136	158	136	158	0.99
6	17	5.1e-06	0.00047	21.9	2.8	1	23	168	190	168	190	0.98
7	17	0.0002	0.019	16.8	1.7	1	23	195	217	195	217	0.97
8	17	8.7e-05	0.008	18.0	1.2	1	23	230	252	230	252	0.98
9	17	6.4e-05	0.0059	18.4	3.7	1	23	263	285	263	285	0.98
10	17	1.6e-05	0.0015	20.3	3.3	1	23	291	313	291	313	0.97
11	17	0.00036	0.033	16.0	1.5	1	23	326	348	326	348	0.98
12	17	0.0084	0.78	11.7	0.7	1	23	354	376	354	376	0.98
13	17	5.9e-05	0.0055	18.5	1.6	1	23	382	404	382	404	0.96
14	17	0.0026	0.24	13.3	0.5	1	23	410	432	410	432	0.98
15	17	0.01	0.96	11.5	7.2	1	23	438	460	438	460	0.98
16	17	0.0003	0.027	16.3	2.3	1	23	466	488	466	488	0.98
17	17	0.0059	0.54	12.2	2.5	1	23	494	517	494	517	0.95

Sequence Information

Coding Sequence: ATGCGAATTAGTACAACACGCCCCGATCGACTTTTCAAATGCGAATACTGCGATTACAAAACGATTTATGCCGCCACACTCAAGTCACACGTTTTTACgcataccggcgagaaaccgtacGAGTGTAATTTGTGCGACTACAGAAGCACAATGCCCGGAAATCTCAAGAGGCACATGAGGCTACACCTCGTTAAGAAAGAGGCCGAAGGAGCAGAACCCGAGTTCGCATGTGAGATTTGTGGTTTTAAGACGACGCAAGCCGATTATCTGAAGAAGCACTTGAAAAGGCACGACGACCGGAAACCGGATCAGAGCTTGAAGTTCGAATGTAAGCACTGCGATTACAAGACGAATCGCGCCAACACTCTCAAGAAACACGTTTTTacgcacaccggcgaaaagccgTACGAATGTAAACTGTGCGACTACAGATGCACCATGTCTGGAAATATCACGAGGCACATGAGGGTGCATCTCGCCAATGAGAAAGTTGAATCCGAGTTCACATGTGAAATTTGTGGGTTTAAAACGACGCAAAGGGATTATTTGAAGAAGCACATGAAAAGACACGGCGATCAGCCGTTTGCTTGTAAGCTGTGCGACTATAGGTGCGCCGTGTCCGGGAACTTCAAAAGGCACATGATAATGCACGAGGTAAAAGAAAAGGGCGACGAATATGAATATAAATTCACGTGTAATGTTTGCGGTTTTAAAACCATTCTAGCTAGTTACCTGAACAAGCACATGAAGCGACACAGTGGTCAGAAACCGGCCGTTTGTTTGTGGCACAAATGCGATTATTGCGATTATAAGTCGAGTCGCGCCGCCACTCTCAGAAAACATATGTTTACGCATAGtggcgagaaaccgttcgcgTGTAAACTGTGCGATTACAGCTGCAGCTCGTCCGGAAACCTCCGGAGGCACTCGCGGACGCACATGACAAAAGAAAAACTCCACGATACTGACAAAAAATTTACGTGTGAGGTCTGCAATTTTAAAACCACCAAAGCCAAATACCTGAGGAATCACATGTTGGTGCACAGTGTCGAGAAGCCGTACCAATGCGATCGCTGCGGCAACAAATTCGCCTCGAGAGCGATTTTGAAGATGCACACGATGCGACACACCGGCGAAAGACCGTACGAGTGCAACGTTTGCGGTTTTAAATGTAGCCAAAGCGGTTCACTGAAACGTCACCTCGTGTTGCACACCGGCGTGAAAACTTTCCAGTGCAACAGATGCGATTACAGGGCCGCCATAAAAGGCACCCTCACGAAACACATGGCTAAACATTCCACGGAGAAACCGTTCGAGTGCCACATTTGTAAGCACAAAACGAAAACCCGGAATCGTTTAAAGAATCACATGTTATCGCACACGGGCGAGCGGCTACACAAGTGTGACGTTTGTAATAAAAGATTCGCCCTTTACAAGGGCATGAAAAGGCACATGTTGATACATGCAGGGGAGAAACCGTTCGCGTGTAGTTTATGCGAGTACAGATCTAATCAGCAGTCGAACGTCAAAGTGCACATGAAACACAGACACAAGGAATGTGATTTTAATGAATTCATTGCAAGTAAAACTGAAGCAACGTTAACGGAAACCGATCGCttgtttcaataa
Protein Sequence: MRISTTRPDRLFKCEYCDYKTIYAATLKSHVFTHTGEKPYECNLCDYRSTMPGNLKRHMRLHLVKKEAEGAEPEFACEICGFKTTQADYLKKHLKRHDDRKPDQSLKFECKHCDYKTNRANTLKKHVFTHTGEKPYECKLCDYRCTMSGNITRHMRVHLANEKVESEFTCEICGFKTTQRDYLKKHMKRHGDQPFACKLCDYRCAVSGNFKRHMIMHEVKEKGDEYEYKFTCNVCGFKTILASYLNKHMKRHSGQKPAVCLWHKCDYCDYKSSRAATLRKHMFTHSGEKPFACKLCDYSCSSSGNLRRHSRTHMTKEKLHDTDKKFTCEVCNFKTTKAKYLRNHMLVHSVEKPYQCDRCGNKFASRAILKMHTMRHTGERPYECNVCGFKCSQSGSLKRHLVLHTGVKTFQCNRCDYRAAIKGTLTKHMAKHSTEKPFECHICKHKTKTRNRLKNHMLSHTGERLHKCDVCNKRFALYKGMKRHMLIHAGEKPFACSLCEYRSNQQSNVKVHMKHRHKECDFNEFIASKTEATLTETDRLFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00467120;
90% Identity: iTF_00467120;
80% Identity: iTF_00467120;