Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:75622174-75623625[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.32 35 6.6 0.2 13 23 2 12 1 12 0.90

2 16 1.8e-05 0.002 20.0 0.9 1 23 25 47 25 47 0.97

3 16 0.0007 0.078 15.0 4.6 1 23 58 80 58 80 0.98

4 16 5.2e-05 0.0058 18.5 2.4 1 23 86 108 86 108 0.99

5 16 3.9e-06 0.00043 22.1 2.8 1 23 118 140 118 140 0.98

6 16 0.00029 0.032 16.2 2.2 1 23 145 167 145 167 0.97

7 16 6.6e-05 0.0073 18.2 1.2 1 23 180 202 180 202 0.98

8 16 4.9e-05 0.0054 18.6 3.7 1 23 213 235 213 235 0.98

9 16 2.9e-05 0.0032 19.3 3.5 1 23 241 263 241 263 0.97

10 16 0.00027 0.03 16.2 1.5 1 23 276 298 276 298 0.98

11 16 0.0064 0.71 11.9 0.7 1 23 304 326 304 326 0.98

12 16 4.5e-05 0.005 18.7 1.6 1 23 332 354 332 354 0.96

13 16 0.00072 0.08 14.9 0.6 1 23 360 382 360 382 0.98

14 16 0.008 0.88 11.6 7.2 1 23 388 410 388 410 0.98

15 16 0.00023 0.025 16.5 2.3 1 23 416 438 416 438 0.98

16 16 0.0045 0.5 12.4 2.5 1 23 444 467 444 467 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.32	35	6.6	0.2	13	23	2	12	1	12	0.90
2	16	1.8e-05	0.002	20.0	0.9	1	23	25	47	25	47	0.97
3	16	0.0007	0.078	15.0	4.6	1	23	58	80	58	80	0.98
4	16	5.2e-05	0.0058	18.5	2.4	1	23	86	108	86	108	0.99
5	16	3.9e-06	0.00043	22.1	2.8	1	23	118	140	118	140	0.98
6	16	0.00029	0.032	16.2	2.2	1	23	145	167	145	167	0.97
7	16	6.6e-05	0.0073	18.2	1.2	1	23	180	202	180	202	0.98
8	16	4.9e-05	0.0054	18.6	3.7	1	23	213	235	213	235	0.98
9	16	2.9e-05	0.0032	19.3	3.5	1	23	241	263	241	263	0.97
10	16	0.00027	0.03	16.2	1.5	1	23	276	298	276	298	0.98
11	16	0.0064	0.71	11.9	0.7	1	23	304	326	304	326	0.98
12	16	4.5e-05	0.005	18.7	1.6	1	23	332	354	332	354	0.96
13	16	0.00072	0.08	14.9	0.6	1	23	360	382	360	382	0.98
14	16	0.008	0.88	11.6	7.2	1	23	388	410	388	410	0.98
15	16	0.00023	0.025	16.5	2.3	1	23	416	438	416	438	0.98
16	16	0.0045	0.5	12.4	2.5	1	23	444	467	444	467	0.95

Sequence Information

Coding Sequence: ATGCCCGGCAATCTCAAGAGGCACATGAGGCTGCATCTCGTTAAGAAGGAGGCCGAAGGAGCAGAACCCGAGTTCGCATGTGAGATTTGTGGTTTTAAAACGACGCAAGCCGATTATCTGAAGAAGCACTTGAAAAGGCACGACGACCAGAAACCCGATCAGAGCTTGAAGTTCGAATGTAAGCACTGCGATTACAAGACGAATCGCGCCAACACTCTCAAGAAACACGTTTTTacgcacaccggcgaaaagccATACGAATGTAAATTGTGCGACTACCGATGCACCATGTCTGGAAATATCACGAGGCACATGAGGGTGCATCTTGCTAATGAAAAAGTCGAATCCGAGTTCACATGTGAAATTTGTGGGTTTAAAACAACGCAAAGGGATTACTTGAAAAAGCACATGAAAAGACACGGCGATCAGCCGTTTGCCTGTAAACTGTGCGACTATAAGTGCGCCATGTCTGGGAACTTCAAAAGGCACATGATAATGCACGAGGTAAAAGAAAAGGGCGAGGAATACGAATATAAATTCACGTGTAATGTTTGCGGTTTTAAGACCATTCTAGCTAGTTACCTGAACAAGCACATGAAGCGACACAGTGATCAGAAACCGGCCATTTGCGTGTGGCACAAATGTGATTATTGCGATTATAAGTCGAGTCGCGCCGCCACTCTCAGGAAACATATGTTTACGCATagcggcgagaaaccgttcgcgTGTAAACTGTGCGATTACAGCTGCAGCTCGTCCGGAAACCTCCGGAGGCACTCGAAAACCCACATGACAAAAGTGAAAGTCCAGGATGCTGACAAGAAATTTACGTGTGAGGTCTGCAATTTTAAAACCACCAAAGCCAAATACCTGAGGAATCACATGTTGGTGCACAGCATCGAGAAGCCGTATCAATGCGATCGCTGCGGCAACAAATTCGCCTCAAGAGCGATTTTGAAAATGCACACGATGCGACACACCGGCGAAAGACCGTACGAGTGCAACGTTTGCGGTTTTAAATGTAGCCAGAGCGGCTCGCTGAAGCGTCACCTCGTGTTGCACACCGGCGTGAAAACTTTTCAGTGCAACAAATGCGATTATAAGGCCGCCATAAAAGGCACCCTCACGAAACACATGGCTAAACATTCCACGGAGAAACCGTTCGAGTGCCACAtctgtaaacacaagacgaaaACCCGGAATCGCTTAAAGAATCACATGTTGTCGCACACGGGCGAGCGGTTACACAAGTGTGACGTTTGTAATAAAAGATTCGCCCTTTACAAGGGCATGAAAAGGCACATGTTGATACATGCAGGAGAGAAACCGTTCGCGTGTAGTTTATGCGAGTACAGATCTAATCAGCAGTCGAACGTCAAAGTGCACATGAAACACAGACACAAGGAATGCGATTTTAATGAATTCATTGCGAGTAAAACTGAAGCGACGTGA
Protein Sequence: MPGNLKRHMRLHLVKKEAEGAEPEFACEICGFKTTQADYLKKHLKRHDDQKPDQSLKFECKHCDYKTNRANTLKKHVFTHTGEKPYECKLCDYRCTMSGNITRHMRVHLANEKVESEFTCEICGFKTTQRDYLKKHMKRHGDQPFACKLCDYKCAMSGNFKRHMIMHEVKEKGEEYEYKFTCNVCGFKTILASYLNKHMKRHSDQKPAICVWHKCDYCDYKSSRAATLRKHMFTHSGEKPFACKLCDYSCSSSGNLRRHSKTHMTKVKVQDADKKFTCEVCNFKTTKAKYLRNHMLVHSIEKPYQCDRCGNKFASRAILKMHTMRHTGERPYECNVCGFKCSQSGSLKRHLVLHTGVKTFQCNKCDYKAAIKGTLTKHMAKHSTEKPFECHICKHKTKTRNRLKNHMLSHTGERLHKCDVCNKRFALYKGMKRHMLIHAGEKPFACSLCEYRSNQQSNVKVHMKHRHKECDFNEFIASKTEAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00467120;
90% Identity: iTF_00467120;
80% Identity: iTF_00465632;