Dhop036639.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:75622174-75623625[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.8 6.7e+03 -1.2 0.2 39 47 4 12 3 18 0.78 2 11 0.53 7.3e+02 1.9 0.0 26 47 26 47 19 53 0.81 3 11 0.17 2.4e+02 3.5 0.1 21 46 82 107 74 114 0.86 4 11 0.7 9.8e+02 1.5 0.0 22 45 115 138 109 141 0.83 5 11 0.025 35 6.1 0.0 20 46 140 166 134 173 0.85 6 11 7.4 1e+04 -1.8 0.1 18 43 201 231 192 235 0.57 7 11 0.0034 4.8 8.9 0.1 21 45 237 261 229 269 0.86 8 11 0.27 3.7e+02 2.8 0.0 23 52 274 303 265 304 0.84 9 11 0.0013 1.8 10.3 0.0 18 47 325 354 321 359 0.89 10 11 0.32 4.4e+02 2.6 0.0 17 44 380 407 372 412 0.77 11 11 0.033 45 5.8 0.2 21 48 440 467 418 469 0.92
Sequence Information
- Coding Sequence
- ATGCCCGGCAATCTCAAGAGGCACATGAGGCTGCATCTCGTTAAGAAGGAGGCCGAAGGAGCAGAACCCGAGTTCGCATGTGAGATTTGTGGTTTTAAAACGACGCAAGCCGATTATCTGAAGAAGCACTTGAAAAGGCACGACGACCAGAAACCCGATCAGAGCTTGAAGTTCGAATGTAAGCACTGCGATTACAAGACGAATCGCGCCAACACTCTCAAGAAACACGTTTTTacgcacaccggcgaaaagccATACGAATGTAAATTGTGCGACTACCGATGCACCATGTCTGGAAATATCACGAGGCACATGAGGGTGCATCTTGCTAATGAAAAAGTCGAATCCGAGTTCACATGTGAAATTTGTGGGTTTAAAACAACGCAAAGGGATTACTTGAAAAAGCACATGAAAAGACACGGCGATCAGCCGTTTGCCTGTAAACTGTGCGACTATAAGTGCGCCATGTCTGGGAACTTCAAAAGGCACATGATAATGCACGAGGTAAAAGAAAAGGGCGAGGAATACGAATATAAATTCACGTGTAATGTTTGCGGTTTTAAGACCATTCTAGCTAGTTACCTGAACAAGCACATGAAGCGACACAGTGATCAGAAACCGGCCATTTGCGTGTGGCACAAATGTGATTATTGCGATTATAAGTCGAGTCGCGCCGCCACTCTCAGGAAACATATGTTTACGCATagcggcgagaaaccgttcgcgTGTAAACTGTGCGATTACAGCTGCAGCTCGTCCGGAAACCTCCGGAGGCACTCGAAAACCCACATGACAAAAGTGAAAGTCCAGGATGCTGACAAGAAATTTACGTGTGAGGTCTGCAATTTTAAAACCACCAAAGCCAAATACCTGAGGAATCACATGTTGGTGCACAGCATCGAGAAGCCGTATCAATGCGATCGCTGCGGCAACAAATTCGCCTCAAGAGCGATTTTGAAAATGCACACGATGCGACACACCGGCGAAAGACCGTACGAGTGCAACGTTTGCGGTTTTAAATGTAGCCAGAGCGGCTCGCTGAAGCGTCACCTCGTGTTGCACACCGGCGTGAAAACTTTTCAGTGCAACAAATGCGATTATAAGGCCGCCATAAAAGGCACCCTCACGAAACACATGGCTAAACATTCCACGGAGAAACCGTTCGAGTGCCACAtctgtaaacacaagacgaaaACCCGGAATCGCTTAAAGAATCACATGTTGTCGCACACGGGCGAGCGGTTACACAAGTGTGACGTTTGTAATAAAAGATTCGCCCTTTACAAGGGCATGAAAAGGCACATGTTGATACATGCAGGAGAGAAACCGTTCGCGTGTAGTTTATGCGAGTACAGATCTAATCAGCAGTCGAACGTCAAAGTGCACATGAAACACAGACACAAGGAATGCGATTTTAATGAATTCATTGCGAGTAAAACTGAAGCGACGTGA
- Protein Sequence
- MPGNLKRHMRLHLVKKEAEGAEPEFACEICGFKTTQADYLKKHLKRHDDQKPDQSLKFECKHCDYKTNRANTLKKHVFTHTGEKPYECKLCDYRCTMSGNITRHMRVHLANEKVESEFTCEICGFKTTQRDYLKKHMKRHGDQPFACKLCDYKCAMSGNFKRHMIMHEVKEKGEEYEYKFTCNVCGFKTILASYLNKHMKRHSDQKPAICVWHKCDYCDYKSSRAATLRKHMFTHSGEKPFACKLCDYSCSSSGNLRRHSKTHMTKVKVQDADKKFTCEVCNFKTTKAKYLRNHMLVHSIEKPYQCDRCGNKFASRAILKMHTMRHTGERPYECNVCGFKCSQSGSLKRHLVLHTGVKTFQCNKCDYKAAIKGTLTKHMAKHSTEKPFECHICKHKTKTRNRLKNHMLSHTGERLHKCDVCNKRFALYKGMKRHMLIHAGEKPFACSLCEYRSNQQSNVKVHMKHRHKECDFNEFIASKTEAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00467120;
- 90% Identity
- iTF_00467120;
- 80% Identity
- iTF_00465206;