Doo019163.3
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411734.1:10579519-10603669[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 47 0.024 2.9 9.6 3.8 1 23 243 266 243 266 0.94 2 47 2 2.4e+02 3.5 0.2 2 23 292 314 291 314 0.94 3 47 0.12 15 7.3 2.3 1 23 336 358 336 358 0.97 4 47 0.61 74 5.2 0.7 1 23 402 424 402 424 0.94 5 47 0.026 3.2 9.5 0.3 2 23 496 518 495 518 0.94 6 47 0.01 1.3 10.7 1.7 2 23 524 546 523 546 0.94 7 47 0.02 2.4 9.8 0.8 1 23 551 574 551 574 0.96 8 47 0.61 75 5.1 0.1 2 23 577 599 576 599 0.93 9 47 0.13 16 7.2 2.2 2 21 606 625 605 626 0.93 10 47 0.02 2.4 9.8 0.3 1 23 685 708 685 708 0.91 11 47 0.035 4.3 9.1 0.2 3 23 737 758 735 758 0.92 12 47 0.032 3.9 9.2 0.4 2 23 781 804 780 804 0.95 13 47 0.0015 0.18 13.4 0.6 3 20 811 828 809 832 0.90 14 47 1 1.2e+02 4.5 0.3 1 23 837 860 837 860 0.96 15 47 0.0003 0.036 15.6 0.2 2 23 866 888 866 888 0.96 16 47 0.00018 0.022 16.3 4.8 1 23 892 915 892 915 0.97 17 47 0.0069 0.84 11.3 0.9 2 23 922 943 921 943 0.96 18 47 0.24 29 6.4 0.9 1 23 991 1013 991 1013 0.95 19 47 0.28 35 6.2 0.0 2 23 1041 1063 1040 1063 0.92 20 47 0.00046 0.056 15.0 0.5 2 23 1084 1106 1083 1106 0.96 21 47 0.0012 0.15 13.7 3.5 1 23 1111 1133 1111 1134 0.95 22 47 7.5e-05 0.0091 17.5 0.9 1 23 1138 1161 1138 1161 0.94 23 47 0.27 32 6.3 0.3 2 23 1164 1186 1163 1186 0.95 24 47 0.11 13 7.6 1.3 2 20 1192 1210 1191 1215 0.91 25 47 0.015 1.8 10.3 2.5 2 23 1260 1282 1259 1282 0.92 26 47 1.2 1.4e+02 4.2 0.1 2 23 1311 1333 1310 1333 0.95 27 47 0.007 0.85 11.3 0.0 1 23 1355 1378 1355 1378 0.91 28 47 5.8e-05 0.007 17.8 0.9 1 23 1383 1406 1383 1406 0.95 29 47 0.0089 1.1 10.9 0.2 1 23 1412 1435 1412 1435 0.94 30 47 0.00031 0.037 15.5 1.0 2 23 1441 1463 1440 1463 0.97 31 47 0.0035 0.42 12.2 4.6 1 23 1467 1490 1467 1490 0.97 32 47 0.04 4.8 8.9 0.8 2 23 1497 1518 1496 1518 0.96 33 47 0.0048 0.59 11.8 3.2 1 23 1566 1588 1566 1588 0.96 34 47 0.064 7.8 8.2 0.1 3 23 1617 1638 1617 1638 0.96 35 47 0.0084 1 11.0 0.8 1 23 1658 1681 1658 1681 0.96 36 47 6.7e-05 0.0081 17.6 0.5 1 23 1686 1709 1686 1709 0.96 37 47 0.0025 0.3 12.7 0.8 1 23 1714 1737 1714 1737 0.96 38 47 0.0013 0.16 13.5 1.1 3 23 1741 1762 1740 1762 0.95 39 47 0.02 2.4 9.8 1.3 2 21 1770 1789 1769 1790 0.94 40 47 0.016 2 10.1 3.3 1 23 1845 1868 1845 1868 0.94 41 47 1.5 1.9e+02 3.9 0.0 2 23 1941 1964 1940 1964 0.94 42 47 3.2e-05 0.0038 18.6 0.1 3 23 1971 1992 1970 1992 0.94 43 47 0.0056 0.68 11.6 2.8 2 23 1997 2019 1996 2019 0.94 44 47 0.018 2.2 10.0 5.1 1 23 2024 2047 2024 2047 0.96 45 47 3.9e-05 0.0047 18.4 5.0 1 23 2051 2074 2051 2074 0.97 46 47 0.00045 0.055 15.0 0.3 2 23 2081 2102 2080 2102 0.96 47 47 1e-05 0.0012 20.2 1.1 1 23 2108 2130 2108 2130 0.98
Sequence Information
- Coding Sequence
- ATGGATTTCGACGAGATTGTGGTGAAGGAGAGCCCCGGGCTTTGCCGGTGCTGTCTCTCCGAAGGATGCTACAAGGATTTGGGCACTGAATATACCTGGATGAATGATACAGAGGTTTATGCTGACATGCTGCTCGAATGCTTCGATATTAGCATAACCCAACACAATGAAGGTCCAAATGGTCCAAACCGGCTCATCTGTGAGGTCTGCATCACTCGGCTGCGGGACGCTTGTAACTTCAAGAAACAAGTCATGGACTCTGAGAAGAAATTCATTGATATGATGGGCAGGGGAGAATTTAGACCTAAGATGCTTATCTACAAGACGCAGCTAAAGTGTGAAGGTCCAGCTGCAGTGGATGAGCCTGATGATGCAGACATTGAATATCTTGAAGATGACCTTGATTTTGGTGATGGTGACCTAAAAGATGAATTAATACAACCTTCAGTATCAGACGTCACGGTATCCTCGTTACCGACCAAAGGCAAGCGTGGTCGCCCTCGCAAGAACACACCAGTGAAGCCGGATAAGAGGGCCAAAGTGGCCAAAGGCGACGATAAGGCCAAGACTTCGAAAGCTGTTGCTAAAGGTGAGAAACGGCGCACCACAGAGGCGTCGAGTAAGTCCTCAATGACGTCCACAAGACGCAACAAATTAATGAAGAATAATGCTATTACAGTTCTAGAAAATTCCACCGTCATCCCCTTCAAATGGCATAGACAAAATTACCTCTGTTTCTTCTGTCATCTGACTTTCAAAGACACTGATTTGCTCAAAGAACATACTAGAAACCAGCATAAGAAATCTAATATCAAAGCTGCTGTTTCATATTTAAGACGAGACGAGAAAGTTAAAATTGACGTCTCCGTGTTAGAATGTCGGTCTTGTAATGATAATTTTGACGATCTAAATGCTCTCATAGAACATCTCAAAAGTTCACATAACATAAAATTCACAGAGGAATGTGGTTACGGACTCATACCGTACTTCCTGCAAAATGAGGTCTACCATTGCGCTGTTTGTAAAGAAGAATTCCAATACTTCATGAAATTGAACCAGCATATGAATGAACACTACGGGAATTATATTTGTAAAAAACCGAGAAAATACAAGGGCACAGAGTCTTCTTCGATGAGAAGGCGACGGAACCTACAAATTCTGTTCAACAACACATCTATTATTCCTTTTAAGTGGCGTGGGAAGTACCTGTGCTTCTATTGCAGCAAAGATATTGCCGAGTATACAGAGTTAAGGAAACATACGAAAGCACATGGTAGCTGTTCCATAAAAGACCATTCTCTCAAAGTCTTAAAAGGAGGACAGAACATGGAAATTAAAGTAGACATATCATTTATTAACTGCGAAGTGTGTGCGGAGACGTTGCCGTCTCTCGATGAAATCATCACTCATTTGTTTGACAAACACGAACTTGAATACGATAAAGCAGTAGAAATGGCTATAGAAGAGTATAAACTTGCCGATCTCAGTTGTACTGGATGCGAAGAAAAATTCACGTATTTCGGCTACCTAGTATCTCACGTCAATAACACCCACCCGAAAAACTGCCTCATTTGCGATAATTGCAACCAAAAATTCAACAAAAGGAGAGATCTGTTTTCTCACGTGAAAAATTACCATCGAGAAGGAGGGTACCAATGCGAAATGTGCCCTCAAATCTTCAACTCGTTGAATATTTTGAGAAAACACCGAAATAATAGGCATTTGACTCGATGCAACATTTGCAATTTAAAATTGCCGTCAGCTGCTTTGAGACAAAAACATATCGAATTAGAACATCCGGACGACGGGTCTTTGCAATGCGATACCTGCTTCAAAGAGTTCCATACGAAACAGGGTCTAAAAATGCATTCAAGGAAATGTAAAGGAGAAGAGATTTTCGGAATCGCCATCAAAGAAGAAAACGTTGCCATGGATTTAGATCTAAACTACGAGGATCAATCCAAAAAACCTTGCGTCAAACAAATACGAGAAAATATAGTTATAGTCATAAACATGTCTACAGCAATACCTTTTAATTTTTATAAGAATAAGTTCAATTGCTTTTACTGCTCCAAAGATTTCGCCGATTCCGATTTGATGAGAGAACACGCGGTTATGGAACACCCTGTGTGCGATGTTAAAGAAAAGTGTATAAGGAAATGTAGGGAGTCCGTGGCTTGCGTCAAAATCGATATTTCTTCACTCGCTTGCAAAATCTGCTTCGAGTCATTGACTGACTTGGATCATTTAATTGATCACTTAATCGAGAAACACGATGCGAAATACGACAAATCGATAACAACGTGTTTACAACCCTACAGGCTCATTAAAGACAACATGGTCTGTCCACATTGTCCCGGCGAAGTATTCCGCTTCTTTGGAACGCTTCTTAAACATATGAATATCAAACATACAAACAACAATATCATTTGCGTTTACTGCGGCCAAACATTCCGTAGGGATCAAAACTTACGAGTTCACATTTGGCGTCATCACAGAGCTGGGCGGTTCAAATGCACCATTTGTGCTGCTGAGTGCAATATACCGTCTCGTCTATACATGCATATGGCTCGGGCACATGGCGTAAAAGCTGCTAAATGTCCCAAATGCCCCGAATCTTTCGCTACGCAATATGAAAGGCAGAAACATTTGATCATTGCCCACAATACGGGCCACAAATGCTCTTATTGTGGAAAACTCTTTACAAGAAACTCGTTTATGAGTAATCATATACGAAGAACACATATGAAAGAGAAGAGTATAGAGTGTTCAGTTTGTTATACAAAGTTCTTTAACACTGTTCTGTTGAAAAGGCATATGGTGAAGCATAGCGGGCAGAAGAAGTATAGCTGTGATGTGTGTGATTTGGAAACAGAGGTGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTGCTCAACAATACAACATTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGGGACGATACGAAGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGACCTTGCAGTGATAGCGACAGAGCTATACGACTAGTTAAATCAGCTGATATAGAAATTAAAATAGATGTTTCCGATGTCTCCTGCGACATTTGTTCTGAAAGTTTCCCATTTTTAGACGAAATTATTGACCATTTAATTTATAAACACCAACTGCCTTATGCGAAAGATGTTGAGATGCTGTTATCAGCCTATAGGCTGTTAGATCTTCAATGTCTCCTATGCGATAAAACCTTCAATTTCTTACGTAAATTAATCAGCCATATGAATGTCGCTCATCCAAATAACAGCTTTGAATGTGCCGAATGTAAAAAGAACTTTAATAAAAAGAGGGATTTGGATTCCCACATAAGATTCCATCATAAAAAGCACCATTCTTGTACCAAATGCGATGAAACGTTTCCAACAAACTCCGCGTTACAGATTCATAGGTCTAACGCTCATTCTTCGACTTGTAACATCTGCTTCCAAGTATTTGCATCAGACGGCAAGCGGTTAGCTCATCAGAAATCTGACCATGATTGTAATCAGAGCCAATGTGGATTTTGCAATAAAGTTCTAACAACAAAGCAAGCCTTTATAAGACATGCTGCAAATTGCGAACATAAACCTCAGGAAGAAACCGTCATAATAGATGACGAAGACAAAAAGATATCCGTCAAAGAAATAAGAAAAAGTTTAGCATGTATCTTTAACATGACTACCGCACTACCTTTCAAATTCTTTATGAATAGGTTACGATGTTTCTATTGCACTAAAGACTTCACCTCATGCGAAGATTTAAAAGAACATTCATCGATAGAACATCCTCACTGCGATATATCCTTTAAATCTATGAGGTTAAGAAACAGATATGACGGTGTCCAAATCAAAGTTGATACTTCTTCTTTGTCTTGTAAACTATGCCAAGTCACCTTGCAAGATTTGAACGACTTGATTGACCATTTGAGTAAAGAGCATAAGGTGAAATGCGACTTTTCTGTCGAGAGTAATCTGCAGCCGTTTAAACTGATCAAAGACAACTACCCTTGCCCTATTTGCGGAGAAGTCTACAGATATTTTGGTGTCTTACTTAAGCACGTTAGTGCGTCTCACAGCGGCAATAAACATATATGCATGTACTGCGGCAAAGCGTTCAGAACCGACCCTAATCTTAGAGCTCATATTTCAAGGCGTCATAAAATCGCTGATAATCACAAGTGCGGAAATTGCGATCTAGTTTTTGGGACGATTACTGCGTTAAGAAATCATCAAGGCATCGTTCACGGTACAAAATTGGTTCAATGCTTTGAATGTTCAGAAAAATTTACCTCACAATATTCAATGCAACGGCACTTGATCACGTCTCATGGTACGGGACATAAATGCACTTACTGTGATAAGCTTTTTACTAAAAACTCTTTTATGGTCAACCATGTGAGGAGGTCTCATTTGAAAGAAAAGAATGTAGAATGTTCTGTGTGTTTCGAGAGATTTTTCGACAGTCAAAGGCTGAAAATGCATATGGTGAAACATGTTGGAGAAAGAAACTTCCATTGTGATATTTGTGATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGCGCCGACGGAAAAACTTGAAAATACTGTTCAACCACACTACGATCATGCCATTTAAATGGCGGGGCAAATACCTTTGCTTTTACTGCGGAAAAAACTATACTGAATACACAGAATTTAGAAAGCATACAAAATCCCACGGAATGTGCACCACTAAAGATTACTCCCTAAAATTAATCAAAGGAAATAACATCGAAATTAAAATCGACGTCTCAGAAATCGGTTGTGATATTTGCAATGAACCATTCAGCAGATTCGAAGAAATAATCGATCATTTGATCAGCAAACACAATATGGAATACAACAAAAATATCGATATACCCTTCCAGGAATATCGATTGGTCGATTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATATTTGGTTAAACATGTTAATAACGTTCACCCGCAGAACTGTTTTATTTGTGATGATTGTGGAGTTACTTTCAACAAGAAGAGGGACTTATCTATACATTTGAGGAATTATCACAGACAAGGAGGGTATCCATGCGATTTGTGCTTGAAGAATTTCGAAACTCGTCTTATGTTGCGGAGGCATCAAAATAACATGCATTTTAGGCACTGTAAGAGCTGTGGTTTGCGTTTCGCGTCTCTTTCTCTTTTACAAAAACACGTACAAGTTGATCATCCCCAAAATGAGAGTAATATGAAGTGTAGTTACTGCTCCAAAGAGTTTCACACTTCTTTAGGTTTAAGACAGCATATAAGCAAATGTAAAGTCAAAATCATTTCTCAGGTCGAACCCCCCCACACTTCATTCCTTAACGACAGTAACATAGAACCTAAGAAGAAACAAAACATACTACAAATAAGGCAGAATATACAGTGCGTACTCAACATGTCGACTGCTGTGCCTTTCAAATTCTTTTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTCGTTGAATTTGACGAGTTACGCCACCATACTAGCCTTGAACATCCTGTATGCGATTTGAAGTCCAAATGCATGAAAAAATGCAAAGGAGAAAGGATAGCTGTCAAAATTGACATATCTGCATTAGCTTGCAAAATATGTTGCCTCCCTATGCCTAATTTAGAAGATTTAATCAACCATTTAATAAACGAACATAAAGCGAACTATGATACGTCAATTTCGGGCTGTTTAGAGCCTTTCCGAGTTATAAAAGACAACATGCCATGTCCTATATGCCCGGATACCGTCTTCCGATATTTCGGCATTTTGCTCCGACATATGAACTCCGAACACAGCAACAACAACCGAATATGTGACTTCTGCGGTCGAAGTTTCAGGAACGCGGCGAATCTAAACGTGCATATAACTTACGCACACACAGGTTCCTGCGAATGTGACATTTGTGGGGTCAAATACAAGAACCAGTGGTGTTTGGCGCGACATAGAGCGAGGACACACGATGCGAAAGACCACAAATGTCCAAAATGTCCCGAGCAGTTCCAATCACAGTACCATAAGCAAAAACATTTAATAAAAATGCATAATGTGGGGCACAAATGCAGTTACTGCGGGAAAATGTTTACAAGAAACTCTTTCATGAAAGACCATGTTAGGCGTACACATTTGAAGGAAAAGAACATTCCTTGCTCAATTTGTAATGAGAAGTTTTTCGATAATTATCTCCTGAGAATGCATATGGTGAAACATGAGGGGGATAGGAAATTCAGTTGCACTGTTTGTGGAAAAACCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAAAAGTATGGGCATGTGCAGTTGCAGATTTAA
- Protein Sequence
- MDFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNDTEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMMGRGEFRPKMLIYKTQLKCEGPAAVDEPDDADIEYLEDDLDFGDGDLKDELIQPSVSDVTVSSLPTKGKRGRPRKNTPVKPDKRAKVAKGDDKAKTSKAVAKGEKRRTTEASSKSSMTSTRRNKLMKNNAITVLENSTVIPFKWHRQNYLCFFCHLTFKDTDLLKEHTRNQHKKSNIKAAVSYLRRDEKVKIDVSVLECRSCNDNFDDLNALIEHLKSSHNIKFTEECGYGLIPYFLQNEVYHCAVCKEEFQYFMKLNQHMNEHYGNYICKKPRKYKGTESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRKHTKAHGSCSIKDHSLKVLKGGQNMEIKVDISFINCEVCAETLPSLDEIITHLFDKHELEYDKAVEMAIEEYKLADLSCTGCEEKFTYFGYLVSHVNNTHPKNCLICDNCNQKFNKRRDLFSHVKNYHREGGYQCEMCPQIFNSLNILRKHRNNRHLTRCNICNLKLPSAALRQKHIELEHPDDGSLQCDTCFKEFHTKQGLKMHSRKCKGEEIFGIAIKEENVAMDLDLNYEDQSKKPCVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDLMREHAVMEHPVCDVKEKCIRKCRESVACVKIDISSLACKICFESLTDLDHLIDHLIEKHDAKYDKSITTCLQPYRLIKDNMVCPHCPGEVFRFFGTLLKHMNIKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTICAAECNIPSRLYMHMARAHGVKAAKCPKCPESFATQYERQKHLIIAHNTGHKCSYCGKLFTRNSFMSNHIRRTHMKEKSIECSVCYTKFFNTVLLKRHMVKHSGQKKYSCDVCDLETEVTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKGHGPCSDSDRAIRLVKSADIEIKIDVSDVSCDICSESFPFLDEIIDHLIYKHQLPYAKDVEMLLSAYRLLDLQCLLCDKTFNFLRKLISHMNVAHPNNSFECAECKKNFNKKRDLDSHIRFHHKKHHSCTKCDETFPTNSALQIHRSNAHSSTCNICFQVFASDGKRLAHQKSDHDCNQSQCGFCNKVLTTKQAFIRHAANCEHKPQEETVIIDDEDKKISVKEIRKSLACIFNMTTALPFKFFMNRLRCFYCTKDFTSCEDLKEHSSIEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCKLCQVTLQDLNDLIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKIADNHKCGNCDLVFGTITALRNHQGIVHGTKLVQCFECSEKFTSQYSMQRHLITSHGTGHKCTYCDKLFTKNSFMVNHVRRSHLKEKNVECSVCFERFFDSQRLKMHMVKHVGERNFHCDICDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGMCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPPHTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLINHLINEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKTFLRRSNLSSHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039072; iTF_01535143; iTF_00888501; iTF_01026572;
- 90% Identity
- iTF_00039072;
- 80% Identity
- -