Alyc042155.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796877.1:7956176-7962965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 45 0.62 77 5.4 0.7 1 23 25 47 25 47 0.94 2 45 0.0075 0.93 11.5 0.4 2 23 119 141 118 141 0.94 3 45 0.011 1.3 11.0 1.7 2 23 147 169 146 169 0.94 4 45 0.02 2.5 10.1 0.8 1 23 174 197 174 197 0.96 5 45 2.4 3e+02 3.6 0.1 2 23 200 222 199 222 0.89 6 45 0.13 17 7.5 2.2 2 21 229 248 228 249 0.93 7 45 0.024 3 9.9 0.2 1 23 308 331 308 331 0.90 8 45 0.039 4.9 9.2 0.2 3 23 360 381 358 381 0.92 9 45 0.032 4 9.5 0.4 2 23 404 427 403 427 0.95 10 45 0.0015 0.18 13.7 0.6 3 20 434 451 432 455 0.90 11 45 1 1.3e+02 4.7 0.3 1 23 460 483 460 483 0.96 12 45 0.0003 0.038 15.8 0.2 2 23 489 511 489 511 0.96 13 45 0.00018 0.023 16.5 4.8 1 23 515 538 515 538 0.97 14 45 0.0069 0.86 11.6 0.9 2 23 545 566 544 566 0.96 15 45 1.1 1.3e+02 4.7 0.6 3 23 574 595 572 595 0.92 16 45 0.55 68 5.6 1.1 1 23 632 654 632 654 0.94 17 45 0.18 23 7.1 0.0 2 23 682 704 681 704 0.94 18 45 0.00024 0.03 16.2 0.4 2 23 725 747 724 747 0.96 19 45 0.0015 0.19 13.6 4.1 1 23 752 774 752 775 0.96 20 45 7.4e-05 0.0092 17.8 0.6 1 23 779 802 779 802 0.93 21 45 0.086 11 8.1 0.5 2 23 805 827 804 827 0.96 22 45 0.11 13 7.8 1.3 2 20 833 851 832 856 0.91 23 45 0.012 1.4 10.9 2.3 2 23 901 923 900 923 0.94 24 45 4.4 5.5e+02 2.7 0.1 2 23 952 974 951 974 0.94 25 45 0.007 0.88 11.5 0.0 1 23 996 1019 996 1019 0.91 26 45 5.8e-05 0.0073 18.1 0.9 1 23 1024 1047 1024 1047 0.95 27 45 0.00025 0.032 16.1 0.5 1 23 1053 1076 1053 1076 0.96 28 45 0.00031 0.038 15.8 1.0 2 23 1082 1104 1081 1104 0.97 29 45 0.024 3 9.9 7.2 1 23 1108 1131 1108 1131 0.97 30 45 0.046 5.8 9.0 0.8 2 23 1138 1159 1137 1159 0.96 31 45 0.0049 0.61 12.0 3.2 1 23 1207 1229 1207 1229 0.96 32 45 0.065 8.1 8.5 0.1 3 23 1258 1279 1258 1279 0.96 33 45 0.0085 1.1 11.3 0.8 1 23 1299 1322 1299 1322 0.96 34 45 6.7e-05 0.0084 17.9 0.5 1 23 1327 1350 1327 1350 0.96 35 45 0.002 0.25 13.2 1.0 1 23 1355 1378 1355 1378 0.96 36 45 0.0014 0.17 13.8 1.1 3 23 1382 1403 1381 1403 0.95 37 45 0.02 2.5 10.1 1.3 2 21 1411 1430 1410 1431 0.94 38 45 0.016 2 10.4 3.3 1 23 1486 1509 1486 1509 0.94 39 45 1.6 1.9e+02 4.2 0.0 2 23 1582 1605 1581 1605 0.94 40 45 3.2e-05 0.004 18.9 0.1 3 23 1612 1633 1611 1633 0.94 41 45 0.0056 0.7 11.8 2.8 2 23 1638 1660 1637 1660 0.94 42 45 0.018 2.2 10.3 5.1 1 23 1665 1688 1665 1688 0.96 43 45 3.9e-05 0.0049 18.6 5.0 1 23 1692 1715 1692 1715 0.97 44 45 0.00045 0.056 15.3 0.3 2 23 1722 1743 1721 1743 0.96 45 45 1.6e-05 0.002 19.8 0.6 1 23 1749 1771 1749 1771 0.98
Sequence Information
- Coding Sequence
- ATGAGAAGGCGACGGAATCTACAAATTCTATTCAACAACACATCTATTATTCCATTTAAATGGCGTGGGAAGTACCTGTGTTTCTATTGCAGTAAAGATATTGCTGAGTATACAGAGTTAAGGAAACATACAAAAGCACATGGTAGCTGTTCCATAAAAGACCATTCTCTTAAAGTCTTAAAAGGAGGACAGAACATGGAAATCAAAGTAGACATATCATTGATTAATTGCGAAATGTGTGCAGAAACATTACCGTCTTTTGATGAAATAGTCGCTCATTTGTTTGACAAACATGAACTTGAATACGATAAAGGAGTAGAAATGGCTATCGAAGAGTATAAACTTGCTGATCTCAGTTGCACCGGATGCGATGAAAAGTTCACGTATTTCGGCTACCTAGTCTCCCACGTCAATAATACCCACCCGAAAAATTGCCTCATTTGCGATAACTGCAACCAAAAATTCAACAAAAGGAGAGATTTATTTTCACACGTGAAAAATTATCATCGAGAAGGAGGGTACCAATGCGAAATGTGCCCTCAAATCTTCAACTCATTGAATATCCTAAGAAAACATCGAAATAACAGGCATTTGACTCGATGCAACATTTGCAATTTGAAACTGCCGTCAGCTGCTTTGAGACAAAAACATGTCGATTTAGAACATCCTGACGACGGGTCGTTGCAATGCGATACCTGCTTCAAAGAGTTCCACACGAAACAAGGACTCAAGATGCATTCAAGAAAATGTAAAGGAGAAGAAATTTTCGGAATCGCTATCAAAGAAGAAAATATCGCCATGGACTTGGATCTGAACTACGAGGATAACACCAAAAAACCTTGCGTCAAACAAATACGAGAAAATATAGTTATAGTCATAAATATGTCAACGGCAATACCTTTTAATTTCTATAAGAATAAGTTCAACTGCTTTTATTGCTCCAAAGATTTTGCCGATTCTGATTTGATGAGGGAACACGCGGTTATAGAACATCCGGTGTGCGATGTTAAAGAAAAGTGCATTAGGAAATGTAGGGAGTCTGTCGCTTGCGTCAAAATCGATATTTCTTCACTCGCTTGCAAAATCTGCTTCGAGTCATTGACGGACTTGGATCATTTAATCGATCACTTGATCGCGAAACACGATGCGAAATACGACAAATCGATAACAACGTGTCTGCAACCTTATAGGCTGATTAAAGACAACATGGTCTGTCCACACTGTCCCGGCGAAGTATTCCGCTTCTTCGGAACGCTTCTTAAACATATGAACATCAAACATACCAACAATAATATCATTTGCGTTTACTGCGGCCAAACATTCCGTAGGGATCAAAACTTACGAGTTCACATCTGGCGTCATCACAGAGCTGGGAGGTTTAAATGTACCATATGTGCGGCTGAGTGCAATATACCGTCTCGTTTGTACATGCACATGGCTCGGGCACACGGGGTTAAAGCTGCAAAATGTCCCAAATGCCCTGAATCTTTCGCCACACAATATGAAAGGCAGAAACATTTGATCATTGCCCACAACACGGGCCACAAATGCTCTTATTGcggaaaactttttacaagaaACTCGTTTATGAGTAACCATATACGAAGAACGCATATGAAAGAGAAGAGTATAGAATGTTCTGTTTGCTATACAAAGTTCTTTAATACTGTTCTGTTAAAAAGGCATATGGTTAAACATAGTGGGCAGAAGAAATATGGCTGTGATGTGTGTGGGGAGCGGTTCTACTGGCGCAAGACTATGAAGACCCATCGAGATAGGCTGCATAATTTCGAAACAGAGGTGACAAAGCACAGTGATAGTTATCTAAGGAGGAGAAATCTGCAAATATTATTCAACAACACTACATTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTCTATTGCGGGGACGATACGAAGACGGCCGATCGTCTCCGGAAACACACGAAAGACCACGGACCTTGCAGTGATAGCGACAGAGCAATAAGATTAGTTAAATCAGCTGATATAGAAATCAAAATAGACGTTTCCGATGTCTCCTGCGAGATTTGTTCAGAAAGTTTCCCATTTTTAGACGAAATTATTGACCATTTGATAATTAAACACCAACTGCCTTTTGTGAAAAATGTAGAGATGCTGTTATCAGCGTACAGGCTGTTAGACCTTCAGTGTCTCCTTTGCGATAAAACCTTTAATTACTTACGTAAATTAATCAGCCATATGAACGTCGCTCATCCTAATAACAGCTTTGAATGTTCCGAATGTAAAaagaagtttaataaaaagAGAGATATGGATTCGCACATAAGATTACATCATAAGGAGTACCATTCTTGTACCAAATGCGATGAAACGTTCCCAACTAACTCCGCGTTACAGATTCATAGGGCTAACGCTCATTCTTCGACGTGTAACATCTGCTTCCAAGTATTTGCTTCAGACAGCAAGCGGTTAGCTCATCAGAAATCTGACCACGATTCCAATCAGAGCCAATGTGGATTTTGCAATAAAGTTCTAACAACAAAACAAGCCTTTATAAGACATGCTGCAAATTGCGAACATAAACCTCAAGAAGAAATTGTCATAATTGATGACGAAGACAAAAAAATGACCGTAAAAGATATAAGAAAAAGTTTAGCATGTATCTTTAACATGACTACCGCACTACCTTTCAAATTCTTTATGAATAGATTACGATGTTTCTATTGCACGAAAGATTTCACCTCATGCGAGGGTTTAAAAGAACATACGTCGATAGAACATCCCCACTGCGATATAACCTTTAAATCTATGAGACTAAGGAACAGATATGACGGTGTCCAAGTCAAAGTTGATACTTCTTCTTTGTCTTGTAGATTATGTCAAGTCACCTTGCAGGATTTGAACGACTTGATTGACCATTTGAGCAAAGAGCACAAGGTGAAATGCGACTTTTCTGTCGAAACTTATCTGCAGCCGTTCAAACTGATTAAAGACAGCTACCCTTGCCCTATTTGCGGGGAAGTCTATAGATATTTTGGCGTTTTACTGAAGCACGTCAGTGCTTCTCATAGCGGCAATAAACATATATGCATGTATTGCGGCAAAGCGTTCAGAACTGACCCTAATCTTAGAGCTCATATTTCAAGGCGTCATAAAATCGCTGATAATCACAAGTGCAGTAATTGCGATCTAGTATTTGGGACTAATGGTGCGTTAAGAAATCATCAAGGCACCGTTCACGGTACGAAATTAGTTCAATGCTTCGAATGCTCAGAAAAATTCACCTCGCAATATTCAATGCAACGACACTTGATCACGTCTCACGGTACGGGACATAAATGCACTTACTGCGATaagctttttactaaaaactCTTTTATGGTCAACCATGTAAGGAGATGtcatttgaaagaaaaaaatgttgaatgtTCTGTGTGCTTCGAGAAATTTTTTGACAGTCAAAGGCTGAAAATGCACATGGTTAAACACGTTGGAGAAAGAAACTTCCATTGTGATATTTGTGATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGAGACGACGgaaaaacttgaaaatactgTTCAACAACACTACCATCATGCCATTTAAATGGCGGGGCAAATACCTTTGCTTTTATTGCGGAAAAAACTATACAGAATACACAGAATTTAGAAAGCATACAAAATCCCACGGACTGTGCACCACAAAAGATTACTCCCTTAAACTAATCAAAGGAAATAATATCGAAATTAAAATCGACGTCTCAGAAATCGGTTGTGATATCTGCAATGAACCTTTCAGCAGATTCGAAGAAATAATCGATCATTTGATCAGTAAACACAATATGGAATACaacaaaaatatcgatataccATTCCAGGAATATCGATTAGTCGATTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATATTTGGTTAAACATGTTAATAACGTTCACCCGCAGAACTGTTTTATTTGTGATGATTGTGGAGTTACTTTCAACAAGAAGAGAGACTTGTCTATACATTTAAGGAATTATCACAGACAGGGAGGATATCCCTGCGATTTGTGCTTGAAGAACTTCGAAACTCGCCTTACGTTACGGAGGCATCAAAATAACATGCATTTTAGGCACTGTAAGAGCTGCGGTTTGCGTTTTGCATCCCTTTCTctcttacaaaaacatgtacAAGTTGATCATCCCCAAAATGAGAGTAATATGAAGTGCAGTTATTGCTCCAAAGAGTTCCACACTTCTTTAGGTTTAAGACAACATATAAGCAAATGTAAAGTCAAAATAATTTCTCAAGTCGAACCCCCCCACACTTCTTTTCTAAACGACAGTAACATAGAAcctaagaaaaaacaaaatatactaCAAATAAGACAAAATATACAGTGTGTACTCAATATGTCGACTGCTGTGCCTTTCAAATTCTTTTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTTGTTGAATTTGACGAATTACGCCACCATACCAGTCTTGAACATCCTGTATGCGACTTGAAGTCCAAATGCATGAAGAAATGCAAAGGAGAAAGGATAGCTGTCAAAATTGACATATCTTCATTAGCTTGCAAAATATGTTGCCTTCCTATGCCTAATTTAGAAGATTTAGTCAACCATTTAATAAACGAACATAAGGCAAACTATGATACGTCAATTTCGGGGTGTTTAGAACCTTTCCGAGTTATAAAAGACAATATGCCATGTCCAATATGCCCGGATACCGTGTTCCGATACTTCGGCATTTTGCTCCGACATATGAACTCGGAACATAGCAACAACAACCGAATCTGTGACTTCTGTGGTCGAAGCTTCCGTAATGCGGCGAATCTAAACGTGCACATAACATACGCACATACAGGTTCCTGCGAATGTGACATATGTGGGGTCAAGTACAAGAACCAATGGTGCTTGGCGCGACACAGAGCGCGGACACACGATGCGAAGGACCACAAATGTCCAAAATGTCCCGAGCAGTTCCAATCACAGTATCATAAGcaaaaacacttaataaaaatgCATAATGTGGGGCACAAATGTAGTTACTGCGGGAAAATGTTTACTAGAAACTCCTTCATGAAAGACCATGTTAGGCGTACACATTTGAAGGAAAAGAACATTCCTTGTTCCATTTGTAATGAGAAGTTTTTCGATAATTATCTTCTGAGGATGCATATGGTAAAACACGAGGGGGATAGGAAATTTAGTTGCACTGTCTGTGGAAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAAAAGTATGGGCATGTGCAGTTGCAGATTTAA
- Protein Sequence
- MRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRKHTKAHGSCSIKDHSLKVLKGGQNMEIKVDISLINCEMCAETLPSFDEIVAHLFDKHELEYDKGVEMAIEEYKLADLSCTGCDEKFTYFGYLVSHVNNTHPKNCLICDNCNQKFNKRRDLFSHVKNYHREGGYQCEMCPQIFNSLNILRKHRNNRHLTRCNICNLKLPSAALRQKHVDLEHPDDGSLQCDTCFKEFHTKQGLKMHSRKCKGEEIFGIAIKEENIAMDLDLNYEDNTKKPCVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDLMREHAVIEHPVCDVKEKCIRKCRESVACVKIDISSLACKICFESLTDLDHLIDHLIAKHDAKYDKSITTCLQPYRLIKDNMVCPHCPGEVFRFFGTLLKHMNIKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTICAAECNIPSRLYMHMARAHGVKAAKCPKCPESFATQYERQKHLIIAHNTGHKCSYCGKLFTRNSFMSNHIRRTHMKEKSIECSVCYTKFFNTVLLKRHMVKHSGQKKYGCDVCGERFYWRKTMKTHRDRLHNFETEVTKHSDSYLRRRNLQILFNNTTLIPFKWRGKYLCFYCGDDTKTADRLRKHTKDHGPCSDSDRAIRLVKSADIEIKIDVSDVSCEICSESFPFLDEIIDHLIIKHQLPFVKNVEMLLSAYRLLDLQCLLCDKTFNYLRKLISHMNVAHPNNSFECSECKKKFNKKRDMDSHIRLHHKEYHSCTKCDETFPTNSALQIHRANAHSSTCNICFQVFASDSKRLAHQKSDHDSNQSQCGFCNKVLTTKQAFIRHAANCEHKPQEEIVIIDDEDKKMTVKDIRKSLACIFNMTTALPFKFFMNRLRCFYCTKDFTSCEGLKEHTSIEHPHCDITFKSMRLRNRYDGVQVKVDTSSLSCRLCQVTLQDLNDLIDHLSKEHKVKCDFSVETYLQPFKLIKDSYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKIADNHKCSNCDLVFGTNGALRNHQGTVHGTKLVQCFECSEKFTSQYSMQRHLITSHGTGHKCTYCDKLFTKNSFMVNHVRRCHLKEKNVECSVCFEKFFDSQRLKMHMVKHVGERNFHCDICDGLPGPYEGCTSERRRKNLKILFNNTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLTLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPPHTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISSLACKICCLPMPNLEDLVNHLINEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00449478;
- 90% Identity
- iTF_00449478;
- 80% Identity
- -