Xxan066238.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990671.1:8745157-8757701[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 44 1 2.1e+02 4.7 0.6 1 23 55 77 55 77 0.94 2 44 0.045 8.9 9.0 0.3 2 23 149 171 148 171 0.93 3 44 0.025 5.1 9.7 4.0 1 23 176 199 176 199 0.95 4 44 0.017 3.4 10.3 1.1 1 23 204 227 204 227 0.96 5 44 0.26 51 6.6 0.2 2 23 230 252 229 252 0.93 6 44 0.27 53 6.5 1.1 2 22 259 279 258 279 0.93 7 44 0.041 8.2 9.1 0.4 1 23 340 363 340 363 0.92 8 44 0.062 12 8.5 0.2 3 23 392 413 390 413 0.92 9 44 0.22 43 6.8 0.5 2 23 436 459 435 459 0.94 10 44 0.0014 0.29 13.7 0.6 3 20 466 483 464 487 0.90 11 44 0.16 31 7.3 0.6 1 23 492 515 492 515 0.97 12 44 0.01 2 11.0 0.2 2 23 521 543 521 543 0.96 13 44 6.7e-05 0.013 17.8 5.0 1 23 547 570 547 570 0.97 14 44 0.005 1 12.0 0.9 2 23 577 598 576 598 0.96 15 44 1.7 3.4e+02 4.0 0.3 1 10 604 613 604 617 0.88 16 44 0.35 70 6.1 0.8 1 23 652 674 652 674 0.95 17 44 0.45 89 5.8 0.0 2 23 702 724 701 724 0.89 18 44 0.0014 0.27 13.7 0.3 2 23 745 767 744 767 0.95 19 44 0.0019 0.38 13.3 4.4 1 23 772 794 772 795 0.96 20 44 3.4e-05 0.0067 18.8 0.7 1 23 799 822 799 822 0.96 21 44 0.89 1.8e+02 4.9 0.2 2 23 825 847 824 847 0.91 22 44 0.92 1.8e+02 4.8 1.2 2 20 852 870 851 875 0.90 23 44 0.028 5.6 9.6 2.8 2 23 920 942 919 942 0.94 24 44 0.00092 0.18 14.3 0.0 1 23 1015 1038 1015 1038 0.92 25 44 0.00018 0.035 16.5 0.9 1 23 1043 1066 1043 1066 0.94 26 44 0.00017 0.034 16.6 0.4 1 23 1073 1096 1073 1096 0.95 27 44 0.013 2.5 10.7 0.7 2 23 1102 1124 1101 1124 0.96 28 44 0.0034 0.68 12.5 4.6 1 23 1128 1151 1128 1151 0.97 29 44 0.17 34 7.1 0.8 2 23 1158 1179 1157 1179 0.96 30 44 0.0078 1.5 11.4 2.4 1 23 1227 1249 1227 1249 0.96 31 44 0.14 28 7.4 0.1 3 23 1278 1299 1278 1299 0.96 32 44 0.0083 1.6 11.3 0.8 1 23 1319 1342 1319 1342 0.96 33 44 6.6e-05 0.013 17.9 0.5 1 23 1347 1370 1347 1370 0.96 34 44 0.0024 0.48 13.0 0.8 1 23 1375 1398 1375 1398 0.96 35 44 0.0018 0.37 13.3 0.9 3 23 1402 1423 1401 1423 0.95 36 44 0.02 3.9 10.1 1.3 2 21 1431 1450 1430 1451 0.94 37 44 0.021 4.2 10.0 2.6 1 22 1505 1526 1505 1528 0.90 38 44 1.5 3e+02 4.2 0.0 2 23 1601 1624 1600 1624 0.94 39 44 3.1e-05 0.0062 18.9 0.1 3 23 1631 1652 1630 1652 0.94 40 44 0.0055 1.1 11.8 2.8 2 23 1657 1679 1656 1679 0.94 41 44 0.017 3.5 10.3 5.1 1 23 1684 1707 1684 1707 0.96 42 44 3.8e-05 0.0076 18.6 5.0 1 23 1711 1734 1711 1734 0.97 43 44 0.00044 0.088 15.3 0.3 2 23 1741 1762 1740 1762 0.96 44 44 1.6e-05 0.0031 19.8 0.6 1 23 1768 1790 1768 1790 0.98
Sequence Information
- Coding Sequence
- ATGACGGGCAAGACTCACCGTCTTGAACGTCATTCCTTGATGAATACAGGTAAAAAACCGAGGAAATACAAGAGCACAGAGTCTTCTTCAATGAGAAGGCGACGGAACCTCCAAATTCTATTCAACAACACATCTATTATACCTTTTAAATGGCGCGGGAAGTACCTTTGTTTCTATTGCAGCAAAGACATAGCCGAATATACAGAGTTAAGGAATCATACTAAAGCACATGGCAACTGTTCTATAAAAGACCATTCCTTAAAAGTTTTAAAAGGAGGGAAGAACATGGAAATCAAAGTAGACATCTCTTGTATTTCTTGCGAAGTTTGTGCAGAAACTTTACAGTCTTTCGATGAAATCATTGCTCATTTGTTTGACAAACATGCTCTTGAGTACGACAAAGAGGTAGAAATGGCTATCGAAGAGTATAAACTTGCTAGTCTTAGTTGTACAGCATGCGATGAAACATTCACGTACTTCGGCTACCTAGTTTCACACGTCAATAATAACCACCCCAAAAACTGCCACATTTGCGAGAACTGCAATCAGAAATTCAATAAAAGAAGAGATCTCTTTTCTCACGTGAAAAACTACCATCGAGAAGGAGGATACAAATGCGAAATGTGCCCTCAAGTCTTCAATTCAATGAATATTTTACGAAAACATAGAAACAATAGGCATTTGACTCGATGCAATATATGCAATTTGAAACTACCGTCTGCTTCTATGAGACAGAAGCATATCGACTTAGAACACCCGGACGACGGGTCTTTGCAATGCGATGCTTGCTTCAAGGAGTTCCATACGAAACGAGGCCTGAAGATGCATGCAAGGAAATGTAAGGGGGAAGAGATTTTCGGAATCGCGATCAAAGAAGAAAACTCTGCCATGGACTTAGATTTAGACCAAAATTACGAGGATCCAGTCAAAAGACCTTGCGTCAAACAACTTCGGGAAAATATAGTCACAATTATTAATATGTCCACCGCAATACCTTTTaacttttataagaataagttcaACTGCTTTTACTGCTCCAAAGATTTTGGCGATTCTGATTTGATGAGAGAACACACGGTTGTAGAACACCCCGTATGCGATGTTAACGAAAAATGCATTCGGAAGTGTAGGGAGTCAATATCTTGCGTCAAAATCGATATTTCGTCACTCGCTTGCAAAGTCTGCTTCGAGTCTTTGACAGACTTGGACCATCTAATCGATCACTTAATAGAAAAACACAATGCGAAGTACGACAAATCGATAACTACGTGTCTACAACCTTATAGGCTGATTAAAGACAACATGGTCTGTCCCCACTGTCCAACGGAAGTCTTCAACTTCTTCGGTTCGCTTCTTAAACATATCAACCTGAAACAtacaaataacaatattatttgcGTATACTGCGGTCAGACTTTCCGTAGGGATCAAAACTTACGAGTTCACATTTGGCGTCATCACAGAGCTGGGAGGTTTAAATGCACCATCTGTAATGCTGATTGCAATATACCATCTCGTCTGTACATGCATATGGCCCGCGCTCACGGCGTCAGAGCCGCTAAATGCCCAAAATGCCCCGATTCATTTGCCACGCAATACGAAAGGCAGAAACATTTGATCGTCGCCCATAACACTGGACACAAATGCACGTATTGCGGGAAACTGTTCACAAGAAATTCCTTTATGAATAATCATATCAGGAGAACGCATATGAAAGAGAAGACTAAAGAATGTTCTGTGTGCAATGCGAAGTTCTTTAATACTGTTTTGTTGAGAAGGCATATGGTGAAGCATAGTGGGCAGAAGATATATAGTTGTGATGTGTGTGGGGAACGGTTTCACTGGCATTTGGAAACAGAGGTGACAAAGCACAGTGCTAGTTATCTAAGGAGGCGAAATCTGCAAATATTACTCAACCACACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGTGGAGATGATACGAAGACGCCCGAACGTCTCCGAAAGCACACGAAAGCTCACGGACCTTGCAGTGATAGGGACAGAGCTATAAGACTAATTAAATCAGCTGATGTAGAAATCAAAATAGATGTTTCCGATGTTAGTTGCGAGATTTGTTCAGAATCTTTTCCGTTTTTAGACGAAATCATCGATCATTTGATTTTCAAACACCAATTGCCTTATGCTAAAGACATAGACATATTCTTATCAGCCTATAGGTTATTAGATCTACAATGTCTCCTTTGCGATAAAAGCTTTAATTACTTACGTAAATTAATAACCCATGTGAATGTTGCTCATCCGAATAACAGCTATGAGTGCGCTAAATGCacaaagaagtttaataaaaagaGGGATTTAGATTCGCATATAAGATTCCATCATAAGACATGCCATCCTTGTACCAAATGCGATGAGAAGTTTCCTACCAACTCAGCGTTACAAGTTCATAGATCTACTGCTCATTCTTCGACCTGCAACATTTGTTTTCAAGTATTTGCGTCTGATGGAAAAAGGCTCGCTCATCTAAAAGCGGACCATGTCGCTGAAAACCAATGTGGATTCTGCAATAAAATTCTACCAACTAAACAAGCTTTTATAAGACATGCCTCAAATTGCGAACATAAACCAAACGAAGAATCCATCATAATTGATGAAGAAGACAAAAAGATATCTGTTAAAGAAATAAGAAAAGGCTTAGCAGCCATATTTAATAATACTACCGCACTTCCTTTTAAATTCTTCATGAACAGGATGCGATGTTTCTACTGCACGAGAGACTTTAATTCTTGCGATGATTTAAAAGAGCATACGTTGAACGAACATCCTCTTTGCGATATATCTTTCAAATCTATGAAGTTACGGAACAGGTATGACGGTGTTCTAATCAAAGTTGATACTTCGGCTTTGTCTTGTAGACTGTGTCATATCTCCTTGCAAGATTTGAACGATGTGGTCGACCATTTGAGCAAAGAGCATAAGGTGAAATGCAACTTTTCTATAGATACTCATCTACAGTCTTTCAAACTGATTAAAGACAATTACCCCTGCCCTATTTGTGGTGAAGTTTATAGATACTTTGGGCTCCTACTCAAGCATGTTAGTGCGTCTCACAGTGATAATAAACATATTTGTATGTACTGCGGAAAAGCGTTCCGAACGGACCCGAATTTAAGAGCTCATGTATCAAGACGACATAAAATCGCTGATCATAATCACAAGTGCAGTAATTGCGATCTTATTTTTCCGACTAACGGTGCGTTAAGGAGACATCAAGGGATGGTTCacggtaaaaaaataattcagtGCTTCGAATGTATTGAAAAATTCACTACGCAGTATGCCATGAAAAGGCATTTGATCACGACTCATGGCACGGGGCATAAATGTACTTACTGTGACAAACTGTTCACTAAAAACTCTTTCATGGTCAACCATGTAAGAAGGTCCCACTTAAAAGAAAAGAATGTAGAATGTTCTGTATGTTTCGAGAGGTTTTTCGATACTCAGAGGCTGAAAATGCATATGGTGAAACATGTAGGGGAAAGGAACTTTCATTGTGATATTTGTGATGGTCTACCAGGGCCGTACGAAGGCTGTACCTCTGAGAGGCGACGGAAAAACTTGAAAATACTGTTCAACCACACGACCATCATGCCTTTTAAATGGCGAGGCAAATATCTTTGTTTCTACTGCGGAAAAAACTATACAGAATACATAGAATTCAGGAAACATACAAAATCTCACGGACTATGTACCACTAAAGATTACTCCCTAAAATTAATCAAAGGAAACAACGTCGAAATTAAAATCGATGTCTCGGAAATTGGTTGTGACATCTGCAATGAACCCTTCAACAGATTCGAAGAAATAATCGATCATTTGATCTCGAAACACAATttagaatacaataaaaatattgatataCCCTTCCAGGAATATCGACTTGTCGACTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTACTTCGGTTATTTGGTTAAACATGTTAACAATGTGCACCCGCAGAATTGTTTCATATGCGATGATTGTGGAGTTACCTTCAACAAGAAAAGAGATCTGTCTATACATTTAAGGAATTATCACAAGCAAGGAGGTTATCCCTGCGATTTATGCTTGAAAAACTTCGAAACTCGTCTCATGTTGCGGAGGCATCAAAATAACATGCATTTTAGACACTGCAAGAGTTGCGGTTTGCGGTTCGCGTCACTTTCTCTCTTACAAAAACATGTACTAGTCGATCATCCACAAAATGAGAGTAATATGAAGTGCAGTTACTGCTCGAAAGAGTTTCACACTTCTTTAGGCTTACGGCAGCATATAAGCaaatgtaaagtaaaaataatatctCAGGTCGAACCACAAACTTCTTTTCTAAACGACAGTAACATAGAACCGAAGAAGAAGCAGAATATATTACAAATAAGGCAGAATATACAGTGTGTACTAAATATGTCGACAGCTGTGCCTTTCAAATTCTTCTCCAAATACTCCTGTTTTTATTGCTCAAAGAAATTCGTTGAATTCGACGAGTTGCGCCACCATACCGGTCTTGAACACCCTGTTTGTGATTTGAAATCCAAATGCATGAAGAAATGTAAAGGAGAAAGAATAGCTGTTAAAATCGATATATCTACATTAGCTTGTAAATTGTGTTGCCTTCCAATGCCTAACTTAGAAGATTTGATCAACCATTTAATAGCCGAACATAAAGCAAATTACGATACGTCAATTGCAGGATGTTTAGAACCTTTCCGAGTCATAAAGGATAACATGCCTTGTCCGATATGCCCCGATACTGTATTCAGATACTTCGGCATTTTGCTTCGTCATATGAACTCGGAACACAGCAACAATAACCGAATATGCGATTTCTGCGGTCGAAGTTTCAGAAACGCAGCAAATCTAAACGTGCATATAACCTACGCTCATACTGGTTCATGCGAATGTGACATTTGTGGTGTTAAATATAAGAACCAATGGTGTTTGGCACGGCATAGAGCGAGGACACACGATGCGAAAGACCATAAATGTCCGAAATGCCCCGAGCAGTTTCAGTCACAGTATCATAAACAAAAACATCTAATTAAAATGCACAATGTAGGACATAAATGTAGTTATTGCGGCAAAATGTTTACAAGAAACTCTTTCATGAAAGACCACGTCAGGAGAACGCATTTGAAAGAAAAGAACATTCCATGCTCAATATGTAATGAGAAATTTTTCGATAACTATCTTCTGAGGATGCATATGGTGAAGCATGAGGGGGATAGGAAATTCAGTTGTACGGTTTGTGGGAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAGAAGTATGGGCATGTGCAGTTGTAG
- Protein Sequence
- MTGKTHRLERHSLMNTGKKPRKYKSTESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRNHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISCISCEVCAETLQSFDEIIAHLFDKHALEYDKEVEMAIEEYKLASLSCTACDETFTYFGYLVSHVNNNHPKNCHICENCNQKFNKRRDLFSHVKNYHREGGYKCEMCPQVFNSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKEFHTKRGLKMHARKCKGEEIFGIAIKEENSAMDLDLDQNYEDPVKRPCVKQLRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFGDSDLMREHTVVEHPVCDVNEKCIRKCRESISCVKIDISSLACKVCFESLTDLDHLIDHLIEKHNAKYDKSITTCLQPYRLIKDNMVCPHCPTEVFNFFGSLLKHINLKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTICNADCNIPSRLYMHMARAHGVRAAKCPKCPDSFATQYERQKHLIVAHNTGHKCTYCGKLFTRNSFMNNHIRRTHMKEKTKECSVCNAKFFNTVLLRRHMVKHSGQKIYSCDVCGERFHWHLETEVTKHSASYLRRRNLQILLNHTTLIPFKWRGKYLCFYCGDDTKTPERLRKHTKAHGPCSDRDRAIRLIKSADVEIKIDVSDVSCEICSESFPFLDEIIDHLIFKHQLPYAKDIDIFLSAYRLLDLQCLLCDKSFNYLRKLITHVNVAHPNNSYECAKCTKKFNKKRDLDSHIRFHHKTCHPCTKCDEKFPTNSALQVHRSTAHSSTCNICFQVFASDGKRLAHLKADHVAENQCGFCNKILPTKQAFIRHASNCEHKPNEESIIIDEEDKKISVKEIRKGLAAIFNNTTALPFKFFMNRMRCFYCTRDFNSCDDLKEHTLNEHPLCDISFKSMKLRNRYDGVLIKVDTSALSCRLCHISLQDLNDVVDHLSKEHKVKCNFSIDTHLQSFKLIKDNYPCPICGEVYRYFGLLLKHVSASHSDNKHICMYCGKAFRTDPNLRAHVSRRHKIADHNHKCSNCDLIFPTNGALRRHQGMVHGKKIIQCFECIEKFTTQYAMKRHLITTHGTGHKCTYCDKLFTKNSFMVNHVRRSHLKEKNVECSVCFERFFDTQRLKMHMVKHVGERNFHCDICDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYIEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFNRFEEIIDHLISKHNLEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHKQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVLVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTGLEHPVCDLKSKCMKKCKGERIAVKIDISTLACKLCCLPMPNLEDLINHLIAEHKANYDTSIAGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00449478;
- 90% Identity
- -
- 80% Identity
- -