Dfen007602.1
Basic Information
- Insect
- Diadegma fenestrale
- Gene Symbol
- -
- Assembly
- GCA_037043255.1
- Location
- CM073313.1:5994645-5999039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.038 3.4 8.5 0.3 3 21 8 27 6 28 0.85 2 14 7.6 6.7e+02 1.3 0.0 2 20 34 52 33 53 0.91 3 14 1.2 1e+02 3.8 0.3 1 12 211 222 211 231 0.88 4 14 0.014 1.3 9.8 1.5 1 23 425 447 425 447 0.98 5 14 0.00096 0.084 13.5 0.1 2 23 451 472 450 472 0.97 6 14 0.00012 0.011 16.3 3.0 1 23 484 506 484 506 0.98 7 14 0.0038 0.34 11.6 0.4 1 23 525 546 525 546 0.95 8 14 0.00087 0.076 13.7 0.0 2 23 552 573 551 573 0.95 9 14 5.3e-05 0.0047 17.5 4.8 1 23 625 647 625 647 0.99 10 14 2.3e-06 0.0002 21.8 3.7 1 23 653 675 653 675 0.96 11 14 0.00014 0.012 16.2 4.6 1 23 681 703 681 703 0.98 12 14 1.6e-06 0.00014 22.3 0.8 1 23 709 731 709 731 0.98 13 14 0.0001 0.0089 16.6 0.2 1 23 735 757 735 757 0.99 14 14 0.00044 0.038 14.6 0.2 1 23 765 787 765 787 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCCGTCAGCCTCGTCTGTCCCATGTGTTGCGGCGAAACTTTTGACAACTCGCAATCGCTCAAGTATCATTTGCTCAGCATGACCGATAATCTCTATTGCCCAAACTGTGCCGAGCGCTCCGACTCTGTCGGCGCGCTCATACAACATTTGGATTGCTGCGGCGAAACGCGCGAACTTATCAACATTTACCCGTCCAAAGACTACAAAAGCTCGTCGCccGACGACCAGGCCGATCACGGCCGCTGCACTTTTTTGGCTACCGTCGGCGAAGACGGCGGAATCGTAATGGTCGGCGGTAACTGTAACTCGGACGCGACTAAAGAGCAAGAAAACACGGATATGCAAACGGGGATTGGGAATCATGATGGCGTTTTGGAATTTCCTTCcgagaaggaagaagaaatTCTTGGGATAAGCATGAACGATGATTGGACGAAAgtgaaagaagagaaaagccCGAATGGAATGGTGCAGGATCGAGGGGAAATTGCTAGTGAAAATCATATGGAAGTTGACAATGCCTCGGGAATGGGCTCCTTCGAAGAGGGCTCGAGGGAAGGGCCGGACGAAACTGAGCTTGTCCAAGTAAAAGAGGAGATGCCTGAGGTGGAATCGGACGCTCTTTACAGCTGCAGCAGCTGCGACATGAGCTTCAACAGCGTTTTGTCCCACATCAAAGAGTACCACGACGGACAGGAAGTGGTGCTCGAAATGGCTGAACAACAGATGGACGATTTAGCGGAAGGAACGGAAATGCAGGAGGCTGAGGGAGACAAAGAAGCGATCGAGAGTTTAGGGATCACGAACGAGAGTTTATCGGAAGAAAATTCGAGCGCCGATTCGAATCGCCCTCCCGGGGGAAATTCATCCGGCGGATTACCGAAGCAACGTCGGACGATGAACACTCTGAGAACCGAAGAGTGCGTCGACAGCGAGGGCCGTTTGTACACGAGGAAAGTTGTACAGATCGAGAGATTCTGGGACCGTAGCAACGACGGGGGCGCGGGATCTCAAGGCCATTCGCAACAGCGGCAATCACAAAGTTCATCGAAAAACGCTTCGatgattgagaaatttttttcgaacgcggAAGGActaaaaattcgtacgaaaagCCCGAAAACTGTTAAATCACTTGGTCCGGTTGGCAATGCGGGAACGAGCTCGATGGCGGTACCGACAACGACAACTTTAACAACAACCGCCACTAACGATAACATTCCGACATCGTCCTGGCAACCGAGCGCGCCACTCACCATTAGAATGTACAGATGCAACAAATGTTTAGAACAATTTGTCAAACTCGCTGATTTTCGTGTTCACGCTTGTATTCACGGTAACAATCAGTGCGACCTTTGCGAGCAAGCTTTCGCGAGCGCAAAAGCATTGCAATTGCACTCTCGGATTCACGAGGTTGAAGCCGAGGAAGGAGCAGACAGTAATTTTGTCTGCCAAACTTGTGGTACCGAATTCTCGTCGCACAAGAGCCTCAGATTGCATTCGAGAATGCATGCACCGGTTCGAGCAAGACACGTCGATGCACCAGAGGGCACTGCAACCGAGAATTTCACTTGTAACGAATGCGGAAAAACCCTTTCGGAATCGTACAGAAAAGCTCACATGGCACTGCACAAAGGAGACTCTGTAACTTGTTCCGTTTGCAATAGGAAATTCGATTCGGCCGATAGCCTTGCGATGCACGCTGCGGTGCACATCGAATTTGCACAATCGCAGCAACAGAAACAGGCCGCCGGACAATTGTCCGAAGAGCAGAGGATAGAGGAAGAATCGAACGGAGGAAAACGTACGAAAATGGGAAAGGAAGGAGATAAAAGTGGGGGAGGTGGAGACGCTCCGGAAAAACCTTACCAATGTCAGCACTGTGGAAGGAGGTTCACGAGGCCTCATGAGAAGGTGAAACACGAGAGGATACACACAGGAGAAAAGCCTCACGCTTGCGAAGTCTGTGGGAAAACTTTCCGCGTCTCTTATTGCCTTACGCTTCACATGAGAACTCACACCGGCGTACGGCCGTACGAGTGTCAACATTGCGGCAAAAGATTCAAGGCTTCCTCCGTGTACAATCACCATCTTTTGACTCACGGTGAGGAGCGAGCGTACACGTGTCCCTACTGTCCCAAGACATTCAAAACTCGTGTGCAATTGGCCGGACACAAGAACAGTCACACAAAGCCTTTTCGATGCACCGAGTGTTCCCGACCATTCGCTTCTCTGTACGCCGCCCGCGCTCACATCCAAACCCACAAAAAGGATAATAATTTAAAGTTCAGTTGTTACATATGCGGCGCTTCTTACGGACGAGCGTTTGCTCTTAAAGATCATCTCAAACAACACACCGGACAAGATGTTCTCGTTCCACCGCCCGAACCAGCTCGCGAGGAGGAAGTCATCGACGCCGATGAGTTTATCATCGCTGCGGAGACCGAGGAGTATGAGGAAATCGAGGAAATCGAAGAGATTGAAGAGGAAGATCACAAACTAGTCCAAGTTGCGGCGGCTGCAGCAGCCGCGCATGTCCCTCGACCCAATTTTATCGATTGCAACCAACAGTCCGAATGA
- Protein Sequence
- MGSVSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVGALIQHLDCCGETRELINIYPSKDYKSSSPDDQADHGRCTFLATVGEDGGIVMVGGNCNSDATKEQENTDMQTGIGNHDGVLEFPSEKEEEILGISMNDDWTKVKEEKSPNGMVQDRGEIASENHMEVDNASGMGSFEEGSREGPDETELVQVKEEMPEVESDALYSCSSCDMSFNSVLSHIKEYHDGQEVVLEMAEQQMDDLAEGTEMQEAEGDKEAIESLGITNESLSEENSSADSNRPPGGNSSGGLPKQRRTMNTLRTEECVDSEGRLYTRKVVQIERFWDRSNDGGAGSQGHSQQRQSQSSSKNASMIEKFFSNAEGLKIRTKSPKTVKSLGPVGNAGTSSMAVPTTTTLTTTATNDNIPTSSWQPSAPLTIRMYRCNKCLEQFVKLADFRVHACIHGNNQCDLCEQAFASAKALQLHSRIHEVEAEEGADSNFVCQTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTATENFTCNECGKTLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHIEFAQSQQQKQAAGQLSEEQRIEEESNGGKRTKMGKEGDKSGGGGDAPEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHTGQDVLVPPPEPAREEEVIDADEFIIAAETEEYEEIEEIEEIEEEDHKLVQVAAAAAAAHVPRPNFIDCNQQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00828970; iTF_00829717; iTF_00265927; iTF_00263725; iTF_00266653; iTF_00262844; iTF_01509068; iTF_01299487;
- 90% Identity
- iTF_00828970;
- 80% Identity
- -