Cson007778.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- -
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010000067.1:1886924-1890497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.043 3.5 8.5 0.3 3 21 8 27 6 28 0.85 2 14 6.3 5.2e+02 1.6 0.0 2 20 34 52 33 54 0.90 3 14 1.3 1.1e+02 3.8 0.3 1 12 211 222 211 231 0.88 4 14 0.0069 0.57 11.0 2.2 1 23 424 446 424 446 0.98 5 14 0.0011 0.087 13.5 0.1 2 23 450 471 449 471 0.97 6 14 0.00014 0.011 16.3 3.0 1 23 483 505 483 505 0.98 7 14 0.54 44 5.0 0.3 1 23 524 545 524 545 0.92 8 14 0.00096 0.079 13.7 0.0 2 23 551 572 550 572 0.95 9 14 5.9e-05 0.0048 17.5 4.8 1 23 630 652 630 652 0.99 10 14 2.5e-06 0.00021 21.8 3.7 1 23 658 680 658 680 0.96 11 14 0.00029 0.024 15.3 4.1 1 23 686 708 686 708 0.97 12 14 1.8e-06 0.00014 22.3 0.8 1 23 714 736 714 736 0.98 13 14 0.00011 0.0092 16.6 0.2 1 23 740 762 740 762 0.99 14 14 0.00048 0.039 14.6 0.2 1 23 770 792 770 792 0.97
Sequence Information
- Coding Sequence
- ATGGGGTCCGTAAGCCTGGTTTGTCCAATGTGCTGCGGCGAAACATTTGACAATTCGCAGTCGCTCAAGTATCATTTGTTAAGCATGACCGACAATCTCTATTGTCCAAACTGTGCCGAGCGCTCGGACTCCGTTGGTGCGCTAATACAACATTTGGATAGCTGCGGCGATAATCGTGAACTCATCAACATATATCCGTCAAAAGAATACAAAAACTCATCATCGGACGTACAATCGGATCACGCTCATTGTGGTTTTTTGGCAACGGTGAGCGAAGATGGAGGAATCGTAATGGTCGGAGATAATTGTAATCCGGATGGAAGCAAAGAGCAAGATAACACGGATATCGACACGACAATAGTCAACCATGAGGGTGTTTTGGAATTCCCTAGTGAAAAAGAGGAAGAGATACTGGGGATAAGCCTGAACGATAGTTGGACAAAAATGAAAGAAAAGCAGAGTTCGAACGGAATGGTGGAAGAGAGAGGGGAACTTGTAAGCGATAATCATATGGAAGTTGAAAATTCGACGGGAATAGGTTCTTTGGAAGATGGTCAGAGGGAAGAGGCGGATGAAAACGAGCTTGTCCAAGTAAAAGAGGAGATGCCTGAGGTAGAATCGGATGCTCTTTACAGTTGCAGCAGCTGCGACATGAGTTTCAACAGTGTACTTTCCCACATAAAAGAGTATCACGATGGGCAGGAAGTAGTACTCGAAATGGCTGAACAGCAGATGGACGATTTACCGGAAGAAGCGGAGATGCAGGAGGCTGAGGGGGACAAGGAAACGATAGAGAATTTAGGCATAACGAATGAAGTATTTTCTGAGGATAATTCGAGCGTAGATGCGAGTCGTCCTGCGGGAAGTTCATCCGGTGGATTGCCGAGACAAAGACGAACGATGAACACTCTGAGAACCGAGGAATGCGTTGACAGCGAAGGACGTTTGTACACGAGGAAAGTTGTGCAGATTGAAAGATTCTGGGACCGTGGAACGGATGGAGGAGCCGGATCTCAATCGCAATCGCAGCAACGTCAATCCCAAAACTCCTCAAAGAGCTCTTCAATGATTGAGAAATTTTTCTCGAACGCAGAAGGCCTGAAAATTCGAACGAAAAGTCCGAAAAGCTTAAAACTCGTTACCACGGCTGCCACGACTGTAACGACCTCGATGGAGTCACCAACGACGACAACTTCGACCACCACGTCCACTGAAAACAGTACTTCGACATCTTCCTGGCAAGCAACTCCGTCGCTCACTGTTAGAATGTACAGATGCAACAAATGTCTGGAACAATTTGTCAAACTATCAGATTTTCGTGTTCACGCTTGTATTCACGGTAATAATCAATGCGATCTTTGCGAACAAGCTTTCGCGAGCGCAAAAGCTTTGCAATTACATTCGCGGATTCACGAGGCTGAAGCCGAGGAAGGAAACGACAGCAATTTTGTCTGTCAAACTTGCGGTACTGAATTCTCATCGCACAAGAGCCTGAGATTGCATTCGAGAATGCATGCACCAGTTCGTGCCAGACACGTGGATGCGCCCGAGGGTACTGCCACAGAAAATTTCACGTGTATCGAATGCGGTAAAACGCTTTCCGAGTCGTACAGAAAAGCTCACATGGCCCTTCACAGAGGAGACTCTGTAACTTGTTCTGTTTGCAATAGAAAATTCGATTCGGCTGATAGCCTTGCGATGCACGCTGCGGTACATATAGAATTTGCACAATCGCAGCAACAGCAACAACAGCAGCACAAACAGGGCGTAGCACAATTATTGGAAGACCAGAGGATAGAGGATGAATTAAATGGAGGAAAACGTTTGAAAACAGTAAAAGAAAACGATAAAAGTGGAGGAGGGGCTGGAGATGCTCCAGAAAAACCTTATCAGTGTCAGCATTGTGGAAGGAGATTCACGAGGCCTCATGAAAAAGTGAAACACGAGAGAATACACACGGGAGAAAAGCCTCACGCTTGCGAGGTCTGTGGAAAAACTTTCCGTGTCTCTTACTGCCTTACATTGCACATGAGAACGCACACAGGAGTGCGTCCGTACGCGTGTCAGCATTGCGGAAAAAGATTCAAGGCTTCTTCGGTGTACAATCACCATCTTTTGACTCACGGTGAGGAGCGAGCGTACACGTGTCCCTACTGTCCCAAGACATTCAAAACTCGTGTGCAATTGGCCGGACACAAAAACAGTCACACCAAGCCTTTTCGATGCACCGAGTGTTCGCGACCATTCGCTTCTCTATACGCCGCCCGCGCTCATATCCAAACTCACAAGAAGGATAATAATTTAAAGTTCAGTTGTTACATATGTGGCGCTTCTTACGGACGAGCATTCGCTCTCAAAGATCATCTGAAACAACACACCGGACAGGATGTTCTCGTTCCACCGCCGGAACCAGCTCGCGAGGAAGAAGTCATTGACGCTGATGAATTTATCATCAGTGCCGAGACCGAAGAGTATGAAGAAATAGAGGAAATTGAAGAAATCGAAGAGGAAGAGCACAAACTAGTCGAAGTCGCGGCAGCTGCTGCCGCTGCCCATGTCGGTCTTCCTTGTTCGAACTTTATCGATTGCAACGACCAATCCGAATGA
- Protein Sequence
- MGSVSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVGALIQHLDSCGDNRELINIYPSKEYKNSSSDVQSDHAHCGFLATVSEDGGIVMVGDNCNPDGSKEQDNTDIDTTIVNHEGVLEFPSEKEEEILGISLNDSWTKMKEKQSSNGMVEERGELVSDNHMEVENSTGIGSLEDGQREEADENELVQVKEEMPEVESDALYSCSSCDMSFNSVLSHIKEYHDGQEVVLEMAEQQMDDLPEEAEMQEAEGDKETIENLGITNEVFSEDNSSVDASRPAGSSSGGLPRQRRTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGTDGGAGSQSQSQQRQSQNSSKSSSMIEKFFSNAEGLKIRTKSPKSLKLVTTAATTVTTSMESPTTTTSTTTSTENSTSTSSWQATPSLTVRMYRCNKCLEQFVKLSDFRVHACIHGNNQCDLCEQAFASAKALQLHSRIHEAEAEEGNDSNFVCQTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTATENFTCIECGKTLSESYRKAHMALHRGDSVTCSVCNRKFDSADSLAMHAAVHIEFAQSQQQQQQQHKQGVAQLLEDQRIEDELNGGKRLKTVKENDKSGGGAGDAPEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHTGQDVLVPPPEPAREEEVIDADEFIISAETEEYEEIEEIEEIEEEEHKLVEVAAAAAAAHVGLPCSNFIDCNDQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439680;
- 90% Identity
- iTF_00262844;
- 80% Identity
- -