Crap006030.1
Basic Information
- Insect
- Campoletis raptor
- Gene Symbol
- -
- Assembly
- GCA_948107755.1
- Location
- OX403626.1:3357674-3361128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.034 2.9 8.5 0.3 3 21 8 27 6 28 0.85 2 14 5 4.3e+02 1.6 0.0 2 20 34 52 33 54 0.90 3 14 1 87 3.8 0.3 1 12 211 222 211 231 0.88 4 14 0.012 1.1 9.8 1.5 1 23 427 449 427 449 0.98 5 14 0.00079 0.067 13.6 0.1 2 23 453 474 452 474 0.97 6 14 0.00011 0.0091 16.3 3.0 1 23 486 508 486 508 0.98 7 14 0.43 36 5.0 0.3 1 23 527 548 527 548 0.92 8 14 0.00076 0.065 13.7 0.0 2 23 554 575 553 575 0.95 9 14 4.6e-05 0.0039 17.5 4.8 1 23 630 652 630 652 0.99 10 14 2e-06 0.00017 21.8 3.7 1 23 658 680 658 680 0.96 11 14 0.00023 0.02 15.3 4.1 1 23 686 708 686 708 0.97 12 14 1.4e-06 0.00012 22.3 0.8 1 23 714 736 714 736 0.98 13 14 8.8e-05 0.0075 16.6 0.2 1 23 740 762 740 762 0.99 14 14 0.00038 0.032 14.6 0.2 1 23 770 792 770 792 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCCGTAAGCCTGGTTTGTCCTATGTGCTGCGGCGAAACATTTGACAACTCGCAATCACTGAAGTATCATTTGTTAAGCATGACCGACAATCTTTATTGTCCAAACTGTGCCGAGCGCTCAGACTCCGTTGGTGCGCTCATACAACATTTGGATAGCTGCGGTGATAATCGTGAACTCATCAACATATATCCGTCAAAAGAATACAAAAACGTATCATCGGATGTACAATCTGATCACGGTCACTGTGGTTTTTTGGCGACAGTGAGCGAAGACGGAGGAATCGTAATGGTCGGTGATAATTGTAATCCGAATGGAAGCGAAGATCAAGATAATACGGATATGGACACGACAATTGTCAACCATGACGGCGTTTTGGAATTTCCTACTGAAAAAGAAGAAGAGATCCTGGGGATAAGTCTGAAAGATAGTTGGCCGAAATTAAAAGAAGAGAAAAGTTTGAATGGAATGGTGGAAGAGCGAGTGGAACTTGTGAGCGATAATCATATGGAAGTTGAAAATTCTACTGGAATAGACGCTTTTGAAGATGGTCCGAGGGAAGAGCCGGATGAAAACGAGCTTGTCCAAGTAAAAGAGGAGATGCCTGAGGTAGAATCGGATGCTCTTTACAGTTGCAGCAGCTGTGATATGAGTTTCAACAGTGTACTTTCCCACATAAAGGAGTATCACGATGGCCAGGAAGTAGTACTTGAAATGGCTGAGCAGCAGATGGACGATTTACCGGAAGAAACTGGGATGCAGGAGCCTGAGGGAGACAAGGAAACAGAAGACAATTTAGGATTAACAAATGAAACATTTTCAGAAGAAAATTCGAGCGTCGATTCGAGTCGCCCTCTGGGAAGTTCATCCAGTGGATTGCCGAGACAACGACGGACGATGAACACTCTGAGAACGGAGGAATGCGTCGACAGCGAAGGACGTTTGTACACGAGGAAAGTTGTGCAGATAGAAAGATTCTGGGACCGTGGAACGGATGGAGGATCCGGAACTCAATCGCAATCGCAACAACGGCAATCGCAAAACTCCTCAAAGAGCGCTTCAATGATTGAGAAATTTTTCTCGAACGCAGAAGGCCTGAAAATTCGAACGAAAACTCCGAAAAACTTAAAACTCGTTCCCACGACGGCCACGACTGCCACGACTGTCACGACCCCGATGGAGGTACCAACGACGACAACTTCAACCACCACGTCCACTACAAACAATACTCCGACATCTTCCTTTCAAGCAACTGTGCCACTCACTATTAGAATGTACAGATGCAACAAATGTCTGGAACAATTTGTCAAATTAGCAGATTTTCGTGTTCACGCTTGTATTCACGGTAACAATCAATGCGATCTTTGCGAACAAGCTTTCGCGAGCGCAAAAGCCTTGCAATTACATTCTCGGGTTCACGAGGCTGAAGCCGAGGAAGGAAATGACAGTAATTTTGTCTGTCAAACTTGCGGCACTGAGTTCTCATCGCACAAGAGTCTCAGATTGCATTCAAGAATGCATGCACCAGTTCGTGCCAGACACGTAGACGCGCCTGAGGGTACTGCGACAGAAAATTTCACGTGTATCGAATGCGGTAAAACGCTTTCCGAGTCGTACAGAAAAGCTCACATGGCCCTCCACAAAGGAGATTCCGTAACTTGTTCTGTTTGCAATAGAAAATTCGATTCGGCTGATAGCCTTGCGATGCATGCTGCGGTACATATAGAATTTGCACAATCGCAGCAACAGCAACAACAGCAGCACAAACAAGGCGTAGCACAATTATTGGAAGACCAGAGAATAGAAGATGAATTAAATGGAGGAAAACGCATTAAAACAGTAAAGGAAAACGATAAAAGCGGAGGAGATGCTCCGGAAAAACCTTATCAGTGTCAACATTGTGGAAGGAGATTCACGAGGCCTCATGAGAAGGTGAAACACGAGAGAATACACACGGGAGAAAAACCTCACGCTTGCGAGGTTTGCGGAAAAACTTTCCGTGTCTCTTATTGCCTTACACTTCACATGAGAACACACACGGGAGTGCGTCCGTACGCGTGTCAGCATTGTGGAAAAAGATTCAAGGCTTCTTCGGTGTACAATCACCATCTTTTGACTCACGGTGAGGAGCGAGCGTACACGTGTCCCTACTGTCCTAAGACATTCAAAACTCGTGTACAATTGGCCGGACACAAAAACAGTCACACGAAGCCTTTTCGATGCACCGAGTGTTCGCGACCATTCGCTTCTCTATACGCCGCCCGCGCTCATATCCAAACTCACAAGAAGGATAATAATTTAAAGTTCAGTTGTTACATATGTGGCGCTTCTTACGGACGAGCATTCGCTCTCAAAGATCATCTCAAACAACACACCGGACAGGATGTTCTCGTTCCACCGCCGGAACCAGCTCGCGAGGAAGAAGTCATTGACGCTGATGAATTTATCATCAGTGCCGAGACCGAAGAATATGAAGAAATTGAGGAAATTGAAGAAATCGAAGAGGAGGAGCACAAACTAGTCGAAGTCGCGGCAGCTGCTGCCGCTGCCCATGTCGGTGTTCCTTGTTCGAATTTTATCGATTGCAACGACCAATCTGAATGA
- Protein Sequence
- MGSVSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVGALIQHLDSCGDNRELINIYPSKEYKNVSSDVQSDHGHCGFLATVSEDGGIVMVGDNCNPNGSEDQDNTDMDTTIVNHDGVLEFPTEKEEEILGISLKDSWPKLKEEKSLNGMVEERVELVSDNHMEVENSTGIDAFEDGPREEPDENELVQVKEEMPEVESDALYSCSSCDMSFNSVLSHIKEYHDGQEVVLEMAEQQMDDLPEETGMQEPEGDKETEDNLGLTNETFSEENSSVDSSRPLGSSSSGLPRQRRTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGTDGGSGTQSQSQQRQSQNSSKSASMIEKFFSNAEGLKIRTKTPKNLKLVPTTATTATTVTTPMEVPTTTTSTTTSTTNNTPTSSFQATVPLTIRMYRCNKCLEQFVKLADFRVHACIHGNNQCDLCEQAFASAKALQLHSRVHEAEAEEGNDSNFVCQTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTATENFTCIECGKTLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHIEFAQSQQQQQQQHKQGVAQLLEDQRIEDELNGGKRIKTVKENDKSGGDAPEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHTGQDVLVPPPEPAREEEVIDADEFIISAETEEYEEIEEIEEIEEEEHKLVEVAAAAAAAHVGVPCSNFIDCNDQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439680;
- 90% Identity
- iTF_00263725;
- 80% Identity
- -