Rmeg018638.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- -
- Assembly
- GCA_963989365.1
- Location
- OZ022419.1:12725785-12729251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.037 5.3 8.5 0.3 3 21 8 27 6 28 0.85 2 14 7.4 1.1e+03 1.2 0.0 2 20 34 52 33 53 0.91 3 14 1.1 1.6e+02 3.8 0.3 1 12 211 222 211 231 0.88 4 14 0.014 2 9.8 1.5 1 23 424 446 424 446 0.98 5 14 0.00088 0.12 13.6 0.1 2 23 450 471 449 471 0.97 6 14 0.00012 0.017 16.3 3.0 1 23 483 505 483 505 0.98 7 14 0.47 67 5.0 0.3 1 23 524 545 524 545 0.92 8 14 0.00084 0.12 13.7 0.0 2 23 551 572 550 572 0.95 9 14 5.1e-05 0.0073 17.5 4.8 1 23 629 651 629 651 0.99 10 14 2.2e-06 0.00032 21.8 3.7 1 23 657 679 657 679 0.96 11 14 0.00026 0.037 15.3 4.1 1 23 685 707 685 707 0.97 12 14 1.6e-06 0.00022 22.3 0.8 1 23 713 735 713 735 0.98 13 14 9.8e-05 0.014 16.6 0.2 1 23 739 761 739 761 0.99 14 14 0.00042 0.06 14.6 0.2 1 23 769 791 769 791 0.97
Sequence Information
- Coding Sequence
- ATGGGGTCTGTAAGCCTGGTTTGTCCTATGTGTTGTGGTGAAACATTCGACAACTCTCAGTCTCTCAAGTATCACTTGTTGAGTATGACCGATAATCTCTATTGTCCGAACTGTGCCGAGCGCTCAGACTCGGTTGGTGCGCTCATACAACATTTAGATTGCTGCGGTGATAATCGCGAGCTCATCAATATATATCCATCAAGAGCATACAAAAACGCATCGGCGGATGCACAAGCCGATGACGGTCATTGTGGTTTTTTGGCGACGGTAAGCGAAGACGGAGGAATTGTAATGGTCGGTGATAACTGTAATCCGGATGGAACCAAAGAGCAAGatAATACTGACATCCACACGGCAATTAGCAACCATGATGGTGTATTAGAATTCTCAAGTGAAAAGGAAGAAGAGATCCTTGGGATaagcgtgaaagataattggaCAAAAGTTAAAGAAGAAAAGAGCTCCAATGGAATTGTGGAAGAACGAGTAGAACTTGTAACTGAAAACAATACGGAAGTTGGGAATCCCTCGGGAATGAGCTCTTTTGAAGATGTTCCTAGGGAAGATGCTGACGAAACGGAGCTTGTCCAAGTAAAAGAGGAGATGCCTGAGGTAGAATCGGATGCTCTTTATAGTTGCAGCAGCTGCGATATGAGTTTCAACAGTGTACTGTCCCACATAAAGGAGTATCATGACGGACAGGAAGTAGTTCTTGAAATGGCTGAACAGCAGATGGATGATTTGCCAGGAGAAACTGAGATACAGGACCATGAGGACGATAAGGAAACAGTGGAGAGTTTAGGAATGAAAAATGAAGCTTTTTTGGAAGAAAATTCGAGCACCGATTCAAGTCGCCCTCTGGGAAATTCCTCCGGTGGATTGCCAAGGCAACGTCGAACAATGAACACTCTGAGAACCGAGGAGTGCGTTGACAGCGAAGGACGCTTGTACACGAGGAAAGTTGTGCAAATAGAGAGATTCTGGGACCGCGGAACCGAGGGGGGCACTGGATCTCAATCGCATTCGCAACAGCGTCAGTCCCAACATTCGTCAAAGAGCGCTTCAATGATTGAGAAATTTTTCTCGAATGCAGAAGGCTTGAAAATTCGTACGAAAAGCCCGAAAACTATAAAAGTAGTTACTACGACTACCGCGACTGCAACGACTCCGATGATAGTGCCAACAACGACAACTTCAACCAGTACATCGACTACTGACAGCACTCCAACATCGTCCTTTCAAGCCACCGCACCACTCACTATTAGAATGTACAGATGCAACAAATGCCTGGAACAATTTGTCAAGCTAGCAGATTTTCGTGTTCACGCCTGTATCCACGGTAACAATCAGTGCGATCTTTGCGAACAAGCCTTCGCGAGCGCGAAAGCTTTGCAGTTACACTCGCGGGTTCACGAGGCTGAAGCCGAGGAAGGAAACGACAGTAATTTCGTCTGTCAAACTTGCGGTACTGAATTCTCCTCGCACAAGAGCCTCAGATTGCATTCCAGAATGCATGCACCAGTCAGAGCGAGACACGTAGACGCACCCGAGGGTACTGCCACCGAGAATTTCACCTGTATCGAATGTGGTAAAACGCTTTCCGAGTCATACAGAAAAGCTCACATGGCACTACACAAAGGAGACTCCGTAACTTGTTCTGTTTGCAATAGAAAATTCGATTCGGCTGATAGCCTTGCGATGCATGCTGCGGTACATGTAGAATTTTCACAAtcgcagcagcaacagcaacagcagcacAAACAAGATGTAGCACAATCATTGGAAGAGCAGAGGATAGAGGATGAATCAAATGGAGGGAAACGCATGAAAACAGGAAAGGAAACGGATAAAAGTAGAGGGGCCGGAGATGCTCCGGAAAAACCTTATCAGTGTCAGCATTGTGGAAGAAGATTTACGAGGCCTCATGAGAAGGTGAAACACGAGAGAATACACACGGGAGAAAAGCCTCATGCTTGCGAGGTTTGTGGGAAAACTTTCCGTGTCTCTTACTGCCTGACACTTCACATGAGAACTCACACAGGAGTGCGTCCGTACGCGTGCCAGCATTGCGGCAAAAGATTCAAGGCTTCCTCGGTGTACAATCATCATCTTTTGACTCACGGTGAGGAGCGAGCGTACACCTGTCCCTACTGTCCCAAGACATTCAAAACTCGTGTGCAATTGGCCGGACACAAGAACAGTCACACAAAGCCCTTTCGATGCACCGAGTGTTCGCGACCATTCGCTTCTCTATACGCCGCCCGCGCTCATATCCAAACTCACAAAAAGGATAATAATTTAAAGTTCAGTTGTTACATATGTGGCGCTTCTTACGGACGAGCATTCGCTCTTAAAGATCATCTCAAACAACACACCGGACAGGATGTTCTCGTTCCACCGCCGGAACCCGCTCGCGAGGAAGAAGTCATCGACGCTGATGAATTTATCATCAGTGCGGAGACCGAGGAATACGAGGAGATTGAGGAAATAGAAGAAATCGAAGAAGAAGAGCACAAACTAGTCGAAGTTGCGGCAGCTGCTGCCGCTGCTCACGTCGGTGTTCCTCGTTCGAGCTTTATCGATTGCAACGATCAATCCGAATGA
- Protein Sequence
- MGSVSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVGALIQHLDCCGDNRELINIYPSRAYKNASADAQADDGHCGFLATVSEDGGIVMVGDNCNPDGTKEQDNTDIHTAISNHDGVLEFSSEKEEEILGISVKDNWTKVKEEKSSNGIVEERVELVTENNTEVGNPSGMSSFEDVPREDADETELVQVKEEMPEVESDALYSCSSCDMSFNSVLSHIKEYHDGQEVVLEMAEQQMDDLPGETEIQDHEDDKETVESLGMKNEAFLEENSSTDSSRPLGNSSGGLPRQRRTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGTEGGTGSQSHSQQRQSQHSSKSASMIEKFFSNAEGLKIRTKSPKTIKVVTTTTATATTPMIVPTTTTSTSTSTTDSTPTSSFQATAPLTIRMYRCNKCLEQFVKLADFRVHACIHGNNQCDLCEQAFASAKALQLHSRVHEAEAEEGNDSNFVCQTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTATENFTCIECGKTLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHVEFSQSQQQQQQQHKQDVAQSLEEQRIEDESNGGKRMKTGKETDKSRGAGDAPEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHTGQDVLVPPPEPAREEEVIDADEFIISAETEEYEEIEEIEEIEEEEHKLVEVAAAAAAAHVGVPRSSFIDCNDQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439680;
- 90% Identity
- iTF_00266653; iTF_00265927;
- 80% Identity
- -