Vcan003774.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:16933-23289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.033 3.7 8.5 0.3 3 21 8 27 6 28 0.85 2 14 4.8 5.6e+02 1.6 0.0 2 20 34 52 33 54 0.90 3 14 0.98 1.1e+02 3.8 0.3 1 12 211 222 211 231 0.88 4 14 0.012 1.4 9.8 1.5 1 23 415 437 415 437 0.98 5 14 0.0042 0.48 11.3 0.1 2 23 441 462 440 462 0.97 6 14 0.00016 0.019 15.7 2.1 1 23 474 496 474 496 0.98 7 14 0.41 47 5.0 0.3 1 23 515 536 515 536 0.92 8 14 0.00073 0.084 13.6 0.0 2 23 542 563 541 563 0.95 9 14 4.5e-05 0.0051 17.5 4.8 1 23 636 658 636 658 0.99 10 14 1.9e-06 0.00022 21.7 3.7 1 23 664 686 664 686 0.96 11 14 0.00022 0.026 15.3 4.1 1 23 692 714 692 714 0.97 12 14 1.4e-06 0.00016 22.2 0.8 1 23 720 742 720 742 0.98 13 14 8.6e-05 0.0099 16.6 0.2 1 23 746 768 746 768 0.99 14 14 0.00037 0.042 14.6 0.2 1 23 776 798 776 798 0.97
Sequence Information
- Coding Sequence
- ATGGGGTCTGTAAGCCTGGTTTGTCCTATGTGTTGCGGTGAGACATTTGACAACTCTCAGTCTCTCAAGTATCACTTGTTGAGTATGACTGATAATCTCTATTGTCCGAATTGTGCTGAGCGTTCGGATTCCGTCGGTGCACTCATACAGCATTTAGATTCCTGCGGTGATAATCGCGAACTCATCAATATTTACCCATCAAAGGAATACAAAAATGCATCAGGGGATGCAGAAATGGATGACACTCATTGCGGGTTTTTGGCTACCGTAAGCGAAGATGGAGGAATTGTAATGGTTGGGGATAACTGTAATCTGGATGACACTAAAGAGCGAGATAGTACAGATATCCAAACAGCAGTGAGTAACCATGATGGTGTATTAGAATTCCCAAGTGAAAAAGAAGAGGAGATTCTTGGGATATGTGAGAAAGATAATTGGTCAAAATTTAATGAAGAGAAGAATTCTAATGGCATTGTGGAGAAGCAACTAGAACTTGTTAGTGGAAACAATATGGAGGTTGAGAATCCGCTGGAGATGAGCTCTTTTGAAGAAGTTTCTAGGGAAGACCTGGATGAAACGCAGCTTGTCCAAGTAAAAGAGGAGATGCCCGAGGTAGAATCAGATGCTCTTTATAGTTGCAGCAGTTGCGACATGAGTTTTAACAGTGTCTTATCTCACATAAAAGAGTATCACGATGGGCAGGAAGTAGTTCTTGAAATGGCTGAACAGCAGATGGGTGATTTTTCCGAGGAAACCGAGATGCAGGACCACGAGGAAGATAGAGGAATGAAAAATGAAGTTTTTTTGGAAGAAAATTCGAGCGTTGACTCGGGTCGTTCTCTAGGGAATTCTTCTGGTGGCATGCCCAGACAACGTCGGACCATGAACACTCTGAGAACCGAAGAGTGCGTCGACAGCGAAGGACGCCTCTATACGAGAAAAGTTGTGCAGATCGAGAGGTTTTGGGACCGTGGAACCGAGGGAGGCATCGGATCTCAATCACATTCCCAACAACGTCAGTCTCAACACTCATTGAAGAGTGCTTCGATGATTGAGAAATTTTTTTCAAATGCAGAGGGCTTGAAAATTCGGACGAAAAGCCCGAAAACGCTAAAAGTAGTTTCAACAAATACGACGGCTCCGATAACCGCATCAACGACAACAATTTCAACCTCTACATCGACTACTGATAGTACTTCAACATCGTCCTTCCAAGCCACTGCACCGCTTACGATTAGAATGTACAGATGCAATAAATGTTTGGAGCAATTTGTTAAGTTAGCAGATTTCCGTGTTCACGCCTGTATTCACGGCAACAATCAGTGCGATCTTTGTGAACAAGCCTTTGCGAGCGTAAAAGCTTTGCAGTTGCACTCGCGGATTCACGAGGCTGAAGCTGAGGATGGAAACGACAGCAATTTTGTTTGTCAAACTTGTGGTACCGAATTTGCGTCGCACAAAAGCCTCAGATTGCATTCCAGAATGCACGCACCAGTTAGAGCAAGACACGTTGATGCACCTGAAGGTACCGCCACAGAGAATTTCACCTGTATCGAATGCGGTAAAACGCTTTCGGAGTCATACAGAAAAGCTCATATGGCACTACACAAAGGAGACTCGGTTACTTGTTCCGTTTGCAATAGAAAATTCGACTCGGCTGATAGCCTTGCGATGCATGCTGCGGTACATGTAGATTTTGCACAATCACAACAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAGCATAAACAAGATATGGTACAATCATTGGAAGAGCAGAGAATAGACGACGAATCGAATGGAGGAAAACGTATAAAAATAGGGAAGGAAGCGGATAAGAGCGGAGGAGTCGGAGATGCTCCAGAGAAACCGTATCAGTGTCAGCATTGCGGTAGGAGATTTACCAGGCCGCACGAAAAAGTAAAACACGAGAGAATACACACAGGAGAAAAGCCTCATGCTTGTGAGGTTTGTGGGAAAACTTTTCGTGTGTCTTATTGCCTGACGCTTCATATGAGAACTCACACAGGAGTACGTCCGTATGCCTGCCAGCACTGCGGCAAACGATTCAAGGCTTCCTCGGTGTACAATCACCATCTTTTGACGCACGGCGACGAGCGGGCGTACACCTGCCCGTATTGTCCCAAGACATTCAAAACTCGTGTGCAACTGGCTGGTCACAAAAACAGTCACACAAAACCCTTCCGATGTACCGAGTGTTCGCGACCATTTGCCTCTCTATACGCCGCCCGCGCTCACATTCAAACTCACAAGAAAGATAATAATTTGAAGTTCAGTTGTTACATATGCGGGGCTTCTTACGGACGAGCATTTGCTCTTAAAGATCATCTCAAACAACACACCGGACAGGACACTGTCGTTCCACCGCCGGAACCCGCTCGCGAGGAAGAAGTCATCGACGCTGATGAATTTATCATGAGTGGCGAGACCGAGGAATACGAGGAAATTGAGGAAATTGAAGAAATTGAAGAGGAAGAGCACAAATTAGTTCAAGTTGCGGCTGCTGCGGCCGCGGGCCACGTTAGTATTTCTTCCTCGAACTTTATCGACTGCAACAATCAATCGGAATCAATCGGATAA
- Protein Sequence
- MGSVSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVGALIQHLDSCGDNRELINIYPSKEYKNASGDAEMDDTHCGFLATVSEDGGIVMVGDNCNLDDTKERDSTDIQTAVSNHDGVLEFPSEKEEEILGICEKDNWSKFNEEKNSNGIVEKQLELVSGNNMEVENPLEMSSFEEVSREDLDETQLVQVKEEMPEVESDALYSCSSCDMSFNSVLSHIKEYHDGQEVVLEMAEQQMGDFSEETEMQDHEEDRGMKNEVFLEENSSVDSGRSLGNSSGGMPRQRRTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGTEGGIGSQSHSQQRQSQHSLKSASMIEKFFSNAEGLKIRTKSPKTLKVVSTNTTAPITASTTTISTSTSTTDSTSTSSFQATAPLTIRMYRCNKCLEQFVKLADFRVHACIHGNNQCDLCEQAFASVKALQLHSRIHEAEAEDGNDSNFVCQTCGTEFASHKSLRLHSRMHAPVRARHVDAPEGTATENFTCIECGKTLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHVDFAQSQQQQQQQQQQQQQQQQQQQQQQQHKQDMVQSLEEQRIDDESNGGKRIKIGKEADKSGGVGDAPEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHTGQDTVVPPPEPAREEEVIDADEFIMSGETEEYEEIEEIEEIEEEEHKLVQVAAAAAAGHVSISSSNFIDCNNQSESIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439680;
- 90% Identity
- -
- 80% Identity
- -