Delp007781.2
Basic Information
- Insect
- Deilephila elpenor
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949752805.1
- Location
- OX457097.1:12287928-12299404[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.4 1.4e+04 -3.6 0.0 22 41 367 386 362 387 0.81 2 3 1.7 5.4e+03 -2.2 0.0 29 48 405 424 400 427 0.83 3 3 3.4e-17 1.1e-13 51.2 0.0 5 69 751 814 747 816 0.94
Sequence Information
- Coding Sequence
- ATGGCCGTAAAACAATGTTGCATAGAGAACTGTAAGTCCTGCTCATCAAGAAAGGAAGACAATGGTGTCACATATCACAAATTTCCCAAAGATCCAGCCTTACGTAACATTTGGAAGTCAATAACATGTTGCAATGATTCCGACTTGCCGAAGTTTGTTTGCTCGaggcatttttataaaaacgatTTTCAAATGTACAAGGACTCTAAATACATACTGAAGTCAGATGCAGTACCTTCAATATTTCCATGGACTATGACAAAAATTGTTGACACCACAACAATGGAGACCGTGGGTAGTGTATTGGAAAATGCTACGGCAAGCACATCagatgcaaataaattaaatacatccaacagtagTAAAGATTCAGAAGAGAATGTGGAAGCTATAAAACAATTCATTGAAGACCAAGAGAAAGAATTTCAAGAGAAGAATGATGCAGCTAATATTGTCAAgatggaaaatattaaaaatgaacctGCAAATGAAGatgttaaaattgaaaatgCCAGAGAAACAATGGCGGTTGCATCCAGTGTTATGGATATGATTCTTAGTGAGTCGGAAGCAAAGATAGAGAAAAAACATGAAATTGCTCCTGCGCCTAAGTATAGCATTAGTCCCACTGATAAATTCACAAGTGGTAGCATTTCTCTATCTGTTGGTTCGAGAATTGAAGCCAAGGATTTTAGTGAAGAATGGCACCCAGCAGAAATTGTGGAggtcgattttgatgaaatggAAGTCTTGGTTAGATATGAACCGGCTAACAAAATTGTTTCCAGACATGACGAATGGATCAGCGTAAGTAGTCCACGCCTACGGCCTCTTAGTGGCACCACTCCCAAAACTGAGATTAAAGAAGAAACCAAGATGCCAGAGAAGGAAGCGCCAGTCAAAGAAGAggtgaaagaaataaaacaagaagAGAAGGCGAAAGTAACGTTTGCGGTGGGGGAGAGATGTCTGGCGCGATGGAGGGACAACAGACGGTTCATGGCCACTGTACAGAAAGAGTTGGAGGATGGCAGCTACGAGATAATATTCGATGACAACTTCAAATGGAAATGTAGCGTGTCCAGGCTTTATAAATGGAAACCCACGGGCAAACCTGAGCTTACTGTAGAGACATCGTTAAATTCTCCCACGGGTTCAGCATCGCCTATACAATGGGGTGGTCCCAGTACTATCGACGCAGCGGGCAATAACTCAGCATTCCACACACACCTCTTCGACCCAACTCGAGATTACTTGAGCTCCAAAAGCGAGCGTAGAGAGATGAAGAGGAAATTGAACATAAAGGAGATCTTCAACATTGGGCAAAAGAGACAGAAGACGAAACCAGACAAAGAGGTTACGATGTCTAAACGCCCGAGGATTATAAGGAGGTCTACTAAAGTTAAACCTAAAGCAGTAGTTAAGGTTGAAATAAAAACGGATATACCTGATGCTGTTGCCTCCATCATTGGCACACATCCAAAACAGGAAACCATTGTATCAGAAATAAGGATTGATGTCGAACCAGAAATTAAACTAGAACAAAACATTGAGTTAAATAAGGAAGATATTGTTGAAGATGATAAAAAAACTGACATAGCGGACACACAGGTAGCAGATGCTTTTAAAATGGATGAATATAAAGCTGACTTAGATCCTGTACACGAGGAAGATGTGAAGCTAGAGAAATTTGAGAAACAAGATGATGGTAAACACGAAGAAGTAATTGATAGAATGAAAGAAGTCATCAGCAAACTAGAAGTTggattaaatgaaaatgaaaaagtaaATACCCCTAAAGTAGAACCCAAGGAAGAAACTCCAATCCCTGTCAAAGTTGATACAGAAATTAAAGAGGTAGAAATTCCAAAAACTAAAGAGGCAGATGAAAACGTATTCGTAGACGTAGATGGACTTGATGCTGTTGAACCACCAAAACCAACTAAAAAACTGTCAAAGATAAAGAAAGGCAAAAAGATAAGATTACTGCAGGAGAAAAAGGTGAAGAAACAGGTGGAGATTGTAAAGAAAGAGATGGAAGAGATGCGGAAACAGGTGGAAGAAATGAGAAAGCAGATGTTACGGACGCAAGAGTTATCGAAGGGCCAGGAGATGCCGGAGAGTTTCTTGTTGCCGGGAGAGTGGTGTTGCAAGTGGTTGAATGGGCAGCCGGTCGGGGCGGTTAGCGAGATTGTATGTGAACCGAGAACGGACAGCGAGGGAAAACAGGGTTTACCACGGAGAAGTGTTCAGgtGGAAGATAAACGACTACCTCCAGGCTGGACGAAACACATGGTTCGGAGGAGCTTGGGTCATTCTGCCGGGAAATGGGATGTTGTACTTGTCAGCCCAGAAAACCGCCGCTTCCATACTAAGACAGACATGCGGAATTATCTTGAAAATAATCCTGATGAAGCTCTTAAACCGTATGAATTCGCGCTAATGGATTTCGGAGTGCATTTGAAATTATCTCGGCGTATGGGTTGGATATCGACTACACCGGGGGGCGTTGCTGACGGGCCCTCAGTCTCTCCAAGTATAGTGAGCTGCACCTCGCCTCTGATCAAGAAGAGAAAGAAATCAGAGAAGAaaagagaaaagaaaaaattgTCTTTGAAAATGAAGATTGTTGTGCCTACTGAAAGTGTTGCACACGAGCCGATCAATATAGATGCCACATCGGACACGGTGCCCACGCCTGAACCAACCCTCAACACAGTTGCTTTAGAAGACGGATACGTCTACGTCGGTTCACTCAAAGTTCAAATAATCGAGAATTTGCTTCGATGTCCAGCTGAAGGTTGCTTCAAGAATTTCCGAAACAACACACTATTACAGATGCATATAAAACATTACCATAATGAGCTAAGAGAAATGTTAGGAGATACTCCGAAGGTCTTGGACTTGGCATACGCCAGGACAATGCCAGTAGACCCTGACCCGCCGAAACAAGTCGATTCTAAGGTCATTAAGGTCAAAATACCAAAACCACCGAAACGTGAAGAGCCGAAACGAGTCGAACTAGAACCTTTGGACATCAAACCTGATTTAATACTTGATACCGCTCCCAAAACACCAGTTAGCCTTGAGGGGGATAGTATTCCGAAACTGCAAGATTCTCCTAAGTTACGCGATGCGTTGATCAACAAGCCAGTGAAGAGACCAAAGGTCTTACTGCCAGTAAGAAGACCAGAGTTTGACCCAGAACCCACTAACATCGAAGATTTTGATGCGGTGTTACCAGAGATTCCACCAGAGAGCAGTATGATAGATGTGTTAGATTTCGAAACGGCGATATCGACGCACACAGTGACTAAGCCGTTTTCGGAGAAGCGGAAGAAAGGGGACAAGAAACGGAAGTCGTTGACGCTGATGCCTCAGAAGATGAGCGAAGATGAGGAGTGGTTCGCGGCGACTTCTGATGTGGAGACAAGGTCTAGTTTCCCTCGGTCTGGTACGCCTGACTCTAAGATGGCGGAGGTGCCACCGATGCAGGAGGTCGGAGCTTTGTCCGCGGAGTCTAATGAAGAACAAAAGGATTCTCATAAGTACATGTATAATGAGAACGGCGAGCGCGTGAAGATCGTTCACATGAAGCGCGAGGAGATCATCAACTGTCACTGCGGCTATCGCGAGGAGGACGGGCTCATGGTGCAGTGCGAGTTGTGTCTGTGCTGGCAGCACGCGCTCTGCCACAACATACACAGCGAGGcccagGTCCCAGAGAAGTACACATGCAGTATTTGCTTAAATCCCCGTCGCGGTCGTCGCTCGCAGCGGTTCCTTCACGACCAGGACCGTCTGTACGAGGGGCTGCTGCCGGGGGCGAAGCCCTGCGACATGCTCCGGCGCTCGCACGAGCTGTCCGGCAACCTGCTGCGCATACAGGACGCCCTGCACGCGCTCAGGGTCAAGTGCTATGTTGCTAGCAAAAAAGACCACCCGAAGCTATACCTGTGGGCCAAAGACTGGGAGCATGCAGAGTTGTCGTACACGCAGGAGAAACTCAATTCTGACTACACGGATCTCAACATAATGATCAATAGCGTCGGCAAGGAGAACATGCCCGTCCAACCCGAGGACATCAAGGATATGCAGCTCGACGTCAGGGGCACGCTGTGTGATGACCAGGACTCTGACAGGTTCTCGCAGCGGACGGATAGTCAACTGAGTAATGTGTTGTTGAACAACTTGCTGTCGAGTCCAGGCGGCGCGTCACTAGATTTGCCCATAAGCACCTCAGAGTTGGAGACACTTGCCAAATCTGTTCAAGAGCAAGTGTGCCTGGGCGGGGCGGGGTGCGCGCCGCAGCCCGAGGCGGCCATCGAGAACGGCGCGTGCCGCGTGCGCCTGCTGCGCCACCTGCAGCGCTGCCACGCGCTCGTCGACGCGCGGCTCGACTCCATCGAGGCGCAGGTCGCAGAATTGGAATCTCAAGATCCGTCGTTCGAGGACGACGAGACGCCGGACTTTTTCCCGCGAACCAAACACACTGTGCAGATGCTACTACGAGATCTGGACACCATGGAAGAACTTGGAGTCATCACTTAA
- Protein Sequence
- MAVKQCCIENCKSCSSRKEDNGVTYHKFPKDPALRNIWKSITCCNDSDLPKFVCSRHFYKNDFQMYKDSKYILKSDAVPSIFPWTMTKIVDTTTMETVGSVLENATASTSDANKLNTSNSSKDSEENVEAIKQFIEDQEKEFQEKNDAANIVKMENIKNEPANEDVKIENARETMAVASSVMDMILSESEAKIEKKHEIAPAPKYSISPTDKFTSGSISLSVGSRIEAKDFSEEWHPAEIVEVDFDEMEVLVRYEPANKIVSRHDEWISVSSPRLRPLSGTTPKTEIKEETKMPEKEAPVKEEVKEIKQEEKAKVTFAVGERCLARWRDNRRFMATVQKELEDGSYEIIFDDNFKWKCSVSRLYKWKPTGKPELTVETSLNSPTGSASPIQWGGPSTIDAAGNNSAFHTHLFDPTRDYLSSKSERREMKRKLNIKEIFNIGQKRQKTKPDKEVTMSKRPRIIRRSTKVKPKAVVKVEIKTDIPDAVASIIGTHPKQETIVSEIRIDVEPEIKLEQNIELNKEDIVEDDKKTDIADTQVADAFKMDEYKADLDPVHEEDVKLEKFEKQDDGKHEEVIDRMKEVISKLEVGLNENEKVNTPKVEPKEETPIPVKVDTEIKEVEIPKTKEADENVFVDVDGLDAVEPPKPTKKLSKIKKGKKIRLLQEKKVKKQVEIVKKEMEEMRKQVEEMRKQMLRTQELSKGQEMPESFLLPGEWCCKWLNGQPVGAVSEIVCEPRTDSEGKQGLPRRSVQVEDKRLPPGWTKHMVRRSLGHSAGKWDVVLVSPENRRFHTKTDMRNYLENNPDEALKPYEFALMDFGVHLKLSRRMGWISTTPGGVADGPSVSPSIVSCTSPLIKKRKKSEKKREKKKLSLKMKIVVPTESVAHEPINIDATSDTVPTPEPTLNTVALEDGYVYVGSLKVQIIENLLRCPAEGCFKNFRNNTLLQMHIKHYHNELREMLGDTPKVLDLAYARTMPVDPDPPKQVDSKVIKVKIPKPPKREEPKRVELEPLDIKPDLILDTAPKTPVSLEGDSIPKLQDSPKLRDALINKPVKRPKVLLPVRRPEFDPEPTNIEDFDAVLPEIPPESSMIDVLDFETAISTHTVTKPFSEKRKKGDKKRKSLTLMPQKMSEDEEWFAATSDVETRSSFPRSGTPDSKMAEVPPMQEVGALSAESNEEQKDSHKYMYNENGERVKIVHMKREEIINCHCGYREEDGLMVQCELCLCWQHALCHNIHSEAQVPEKYTCSICLNPRRGRRSQRFLHDQDRLYEGLLPGAKPCDMLRRSHELSGNLLRIQDALHALRVKCYVASKKDHPKLYLWAKDWEHAELSYTQEKLNSDYTDLNIMINSVGKENMPVQPEDIKDMQLDVRGTLCDDQDSDRFSQRTDSQLSNVLLNNLLSSPGGASLDLPISTSELETLAKSVQEQVCLGGAGCAPQPEAAIENGACRVRLLRHLQRCHALVDARLDSIEAQVAELESQDPSFEDDETPDFFPRTKHTVQMLLRDLDTMEELGVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00428196; iTF_01429958; iTF_01430007; iTF_00429082; iTF_00429034; iTF_00819243; iTF_00819187;
- 90% Identity
- iTF_00428196; iTF_00429034; iTF_00429082; iTF_00819187; iTF_00819243; iTF_01430007; iTF_01429958;
- 80% Identity
- iTF_00428196;